Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3314 | ATGTTCCATGCTGCCAAGAAACCTTCCTCTATGACTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGCCTTGTCCTCACCACCGACCCCAAACCCCGCCTCCGCTGGACCATCGAGCTCCACGAACGCTTCGTCGACGCTGTCACTCAGCTCGGTGGACCTGATAAGGCCACTCCTAAAACTATCATGAGAGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCAATAAAGGAAAGTATAAGAGCTTCAGCCTTCGAAATTCATAGAAACAATGGATCATCTTCCAGCTTAATGGACCGTAGTATGAATGAAATGCAAATGGAGGTCCAGAGACGACTGCATGAACAAATTGAGGTTCAAAGACATCTCCAATTGAGGATCGAAGCTCAAGGTAAATACATGCAAAGCATATTGGAGAAAGCTTGTCAAACCCTAGCCGGTGAAAACATGGCCGCCGCTGCCGCTGCCGCCACCGCAGGGGGCGGCGAAACCACTTCCAATAATATTGGAACAACCACCAATCTTGTTTCAGACTCCACCATAAAAGACTTCATTTCTCCTCCTCACAATTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCCGAACCGCCAGCACCGCCGCCACTCATCGACTGCCTTAAGAAGCCCAGACCCTTCATCTCTGGAACCGGAAAGTCCCCCATTTTCTGGCCGGACGATCTCCGACTCCAGGACCTAGGAACCCCTCCCACCACCCTACCGCTACCGCCGCCACCTCCGCCCATCGGTGCCCCAACTGACTTGGACCCTCTACAGCTGGAAATGTATGAAACTAAGCCGCGCCCACCGCTGTCGCTGCTCGCCATTGGCAACGATGTAATGAATGGGAAGAAGACGTTCGACATGTCGTTAAAGCTCGAGAGGCCATCGCCGCGACATTCCGATGAAAGGGTGAATAATAACGGTATGCCTAACGGTAATAACCCTACTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA | 1089 | 50.6 | MFHAAKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTIELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKESIRASAFEIHRNNGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAATAGGGETTSNNIGTTTNLVSDSTIKDFISPPHNFPPFQDINNLFTSEPPAPPPLIDCLKKPRPFISGTGKSPIFWPDDLRLQDLGTPPTTLPLPPPPPPIGAPTDLDPLQLEMYETKPRPPLSLLAIGNDVMNGKKTFDMSLKLERPSPRHSDERVNNNGMPNGNNPTTMSQPQGRNSSFG | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42487955 | 42491192 | + | Sed0026119.1 | Sed05g3314 | 715940 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3314 | 362 | Gene3D | - | 32 | 90 | - | - | |
Sed05g3314 | 362 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Sed05g3314 | 362 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Sed05g3314 | 362 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Sed05g3314 | 362 | MobiDBLite | consensus disorder prediction | 322 | 362 | - | - | |
Sed05g3314 | 362 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
Sed05g3314 | 362 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
Sed05g3314 | 362 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
Sed05g3314 | 362 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 9 | 203 | IPR046955 | GO:0003700(InterPro) | |
Sed05g3314 | 362 | MobiDBLite | consensus disorder prediction | 335 | 362 | - | - | |
Sed05g3314 | 362 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0770 | Sed-Chr1:5741691 | Sed05g3314 | Sed-Chr5:42487955 | 1.20E-92 | dispersed | |
Sed04g3560 | Sed-Chr4:44975886 | Sed05g3314 | Sed-Chr5:42487955 | 8.10E-78 | dispersed | |
Sed04g3561 | Sed-Chr4:44975886 | Sed05g3314 | Sed-Chr5:42487955 | 2.20E-75 | dispersed | |
Sed05g3314 | Sed-Chr5:42487955 | Sed12g0380 | Sed-Chr12:2306597 | 6.80E-43 | dispersed | |
Sed05g3314 | Sed-Chr5:42487955 | Sed05g3315 | Sed-Chr5:42487955 | 3.00E-147 | tandem | |
Sed01g0769 | Sed-Chr1:5741349 | Sed05g3314 | Sed-Chr5:42487955 | 5.60E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38709 | PF00249 | Myb_DNA-binding | 5.60E-06 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3314 | - | - | - | 0.0 |