Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3314 ATGTTCCATGCTGCCAAGAAACCTTCCTCTATGACTTCCCATGACAGGCCAATGTGTGTCCAAGGAGATTCCGGCCTTGTCCTCACCACCGACCCCAAACCCCGCCTCCGCTGGACCATCGAGCTCCACGAACGCTTCGTCGACGCTGTCACTCAGCTCGGTGGACCTGATAAGGCCACTCCTAAAACTATCATGAGAGTTATGGGCGTCAAGGGCCTCACTCTCTACCATCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCAATAAAGGAAAGTATAAGAGCTTCAGCCTTCGAAATTCATAGAAACAATGGATCATCTTCCAGCTTAATGGACCGTAGTATGAATGAAATGCAAATGGAGGTCCAGAGACGACTGCATGAACAAATTGAGGTTCAAAGACATCTCCAATTGAGGATCGAAGCTCAAGGTAAATACATGCAAAGCATATTGGAGAAAGCTTGTCAAACCCTAGCCGGTGAAAACATGGCCGCCGCTGCCGCTGCCGCCACCGCAGGGGGCGGCGAAACCACTTCCAATAATATTGGAACAACCACCAATCTTGTTTCAGACTCCACCATAAAAGACTTCATTTCTCCTCCTCACAATTTCCCTCCTTTTCAAGACATCAACAACCTATTTACCTCCGAACCGCCAGCACCGCCGCCACTCATCGACTGCCTTAAGAAGCCCAGACCCTTCATCTCTGGAACCGGAAAGTCCCCCATTTTCTGGCCGGACGATCTCCGACTCCAGGACCTAGGAACCCCTCCCACCACCCTACCGCTACCGCCGCCACCTCCGCCCATCGGTGCCCCAACTGACTTGGACCCTCTACAGCTGGAAATGTATGAAACTAAGCCGCGCCCACCGCTGTCGCTGCTCGCCATTGGCAACGATGTAATGAATGGGAAGAAGACGTTCGACATGTCGTTAAAGCTCGAGAGGCCATCGCCGCGACATTCCGATGAAAGGGTGAATAATAACGGTATGCCTAACGGTAATAACCCTACTACAATGTCACAGCCACAGGGAAGAAATTCTTCATTTGGTTAA 1089 50.6 MFHAAKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTIELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKESIRASAFEIHRNNGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAAAAAATAGGGETTSNNIGTTTNLVSDSTIKDFISPPHNFPPFQDINNLFTSEPPAPPPLIDCLKKPRPFISGTGKSPIFWPDDLRLQDLGTPPTTLPLPPPPPPIGAPTDLDPLQLEMYETKPRPPLSLLAIGNDVMNGKKTFDMSLKLERPSPRHSDERVNNNGMPNGNNPTTMSQPQGRNSSFG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42487955 42491192 + Sed0026119.1 Sed05g3314 715940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3314 362 Gene3D - 32 90 - -
Sed05g3314 362 MobiDBLite consensus disorder prediction 1 26 - -
Sed05g3314 362 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Sed05g3314 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Sed05g3314 362 MobiDBLite consensus disorder prediction 322 362 - -
Sed05g3314 362 FunFam Myb family transcription factor 32 90 - -
Sed05g3314 362 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Sed05g3314 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Sed05g3314 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 203 IPR046955 GO:0003700(InterPro)
Sed05g3314 362 MobiDBLite consensus disorder prediction 335 362 - -
Sed05g3314 362 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0770 Sed-Chr1:5741691 Sed05g3314 Sed-Chr5:42487955 1.20E-92 dispersed
Sed04g3560 Sed-Chr4:44975886 Sed05g3314 Sed-Chr5:42487955 8.10E-78 dispersed
Sed04g3561 Sed-Chr4:44975886 Sed05g3314 Sed-Chr5:42487955 2.20E-75 dispersed
Sed05g3314 Sed-Chr5:42487955 Sed12g0380 Sed-Chr12:2306597 6.80E-43 dispersed
Sed05g3314 Sed-Chr5:42487955 Sed05g3315 Sed-Chr5:42487955 3.00E-147 tandem
Sed01g0769 Sed-Chr1:5741349 Sed05g3314 Sed-Chr5:42487955 5.60E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38709 PF00249 Myb_DNA-binding 5.60E-06 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3314 - - - 0.0