Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3319 ATGCCCCTAACAGCATGGTTGAGCAATATGGGAAACTTAATAAACTCGTCTTCTAAACGGAGGGGCGGCGGCGAAAAGGCTGTGAAAGCGACCAGAGAACCGTCGTTGAAGAAGGCTGGCCGGAGTAACAGCGGCGGCGGCGGTAGCAGCCGGGGAAAACCCTCGCGGTGGTTTGAAAAAAAGGCTTCTTTTCGCAAGAAATATGGTTTCATTGCTGATAACTTCTCCTCCATTGACCAGGTTACAGAAGCGTTGAGAAAAGAAGGTTTAGAATCGTCAAATCTCATCGTCGGAATCGATTTCACCAAAAGCAACGAGTGGACAGGCAAAGTCTCGTTCAATAATCGGAGCTTGCACTCGATCTCCGATTCTCCTAATCCCTACGAGAAGGCGCTTTCAATCATCGGCAAAACCCTAGCTCCTTTCGACGACGACGGCTTAATTCCTTGCTTCGGTTTCGGCGACGCGACGACACACGATCAAGAGGTTTTCAGTTTCCACAGCGATCATTCTTCTTGCCATGGATTTGAAGAAGTTCTGAACTGCTACAAAAGGATAGTTCCGAATGTGCAACTTTCAGGTCCGACTTCTTACGGTCCTGTGGTTGAAGCTGCAATGGACATTGTGGAGAAGAGTAATGGCCAGTTTCATATTCTTCTCATCCTTGCAGATGGACAGGTTACTCGAAGCTCAAGCATTGGCGATGGCGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCGATCATTCTTATTGGAGTTGGAGACGGGCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCTCGAGATTTCGATAATTTTCAGTTTGTTAACTTCACTGAAATCATGTCCAAAAACGTCAACACGCCTGAAAAAGAAGAAGCAGCTTTTGCTCTAGCTGCACTTATGGAAGTTCCTTTACAATACAAAGCCGTCGTAGAAATGAATCTTATAGGGCATGCAACTGGAAAAGCGAAAAGAATGCTTCCACAACCCCCGCCGATGCGTCATACTCGTCCGGTACAACTTACTCCCAGGCCCAGCAACACTCCCATACCCAGCAACACCTCCTCCTCAGCTTCTGCATCTGATGATCATAGTCAGGTCTGCCCCATTTGTTTGACTGAGGCGAAGGATCTAGCCTTTGGATGCGGCCACATGACCTGTAGAGAATGTGGATCAAAACTATCGAATTGCCATATATGTCGCCAGCCTATCAGAAACCGCATAAGGCTATATACCGGGTGA 1287 47.24 MPLTAWLSNMGNLINSSSKRRGGGEKAVKATREPSLKKAGRSNSGGGGSSRGKPSRWFEKKASFRKKYGFIADNFSSIDQVTEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHSISDSPNPYEKALSIIGKTLAPFDDDGLIPCFGFGDATTHDQEVFSFHSDHSSCHGFEEVLNCYKRIVPNVQLSGPTSYGPVVEAAMDIVEKSNGQFHILLILADGQVTRSSSIGDGELSVQEEKTIKAIVDASAYPLSIILIGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNVNTPEKEEAAFALAALMEVPLQYKAVVEMNLIGHATGKAKRMLPQPPPMRHTRPVQLTPRPSNTPIPSNTSSSASASDDHSQVCPICLTEAKDLAFGCGHMTCRECGSKLSNCHICRQPIRNRIRLYTG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42525306 42535651 - Sed0018347.1 Sed05g3319 715945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3319 428 PANTHER COPINE FAMILY PROTEIN 1 54 426 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Sed05g3319 428 MobiDBLite consensus disorder prediction 338 378 - -
Sed05g3319 428 MobiDBLite consensus disorder prediction 14 56 - -
Sed05g3319 428 Pfam Copine 117 332 IPR010734 -
Sed05g3319 428 SUPERFAMILY RING/U-box 379 421 - -
Sed05g3319 428 Pfam Zinc finger, C3HC4 type (RING finger) 380 421 - -
Sed05g3319 428 ProSiteProfiles Zinc finger RING-type profile. 383 416 IPR001841 -
Sed05g3319 428 SMART VWA_4 92 295 IPR002035 -
Sed05g3319 428 MobiDBLite consensus disorder prediction 22 36 - -
Sed05g3319 428 SUPERFAMILY vWA-like 94 275 IPR036465 -
Sed05g3319 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 427 IPR013083 -
Sed05g3319 428 MobiDBLite consensus disorder prediction 355 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3319 K16280 - - csv:101218058 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3319 Sed-Chr5:42525306 Sed11g1886 Sed-Chr11:33424990 1.30E-122 dispersed
Sed05g3319 Sed-Chr5:42525306 Sed12g2484 Sed-Chr12:34410322 7.30E-121 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55