Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3319 ATGCCCCTAACAGCATGGTTGAGCAATATGGGAAACTTAATAAACTCGTCTTCTAAACGGAGGGGCGGCGGCGAAAAGGCTGTGAAAGCGACCAGAGAACCGTCGTTGAAGAAGGCTGGCCGGAGTAACAGCGGCGGCGGCGGTAGCAGCCGGGGAAAACCCTCGCGGTGGTTTGAAAAAAAGGCTTCTTTTCGCAAGAAATATGGTTTCATTGCTGATAACTTCTCCTCCATTGACCAGGTTACAGAAGCGTTGAGAAAAGAAGGTTTAGAATCGTCAAATCTCATCGTCGGAATCGATTTCACCAAAAGCAACGAGTGGACAGGCAAAGTCTCGTTCAATAATCGGAGCTTGCACTCGATCTCCGATTCTCCTAATCCCTACGAGAAGGCGCTTTCAATCATCGGCAAAACCCTAGCTCCTTTCGACGACGACGGCTTAATTCCTTGCTTCGGTTTCGGCGACGCGACGACACACGATCAAGAGGTTTTCAGTTTCCACAGCGATCATTCTTCTTGCCATGGATTTGAAGAAGTTCTGAACTGCTACAAAAGGATAGTTCCGAATGTGCAACTTTCAGGTCCGACTTCTTACGGTCCTGTGGTTGAAGCTGCAATGGACATTGTGGAGAAGAGTAATGGCCAGTTTCATATTCTTCTCATCCTTGCAGATGGACAGGTTACTCGAAGCTCAAGCATTGGCGATGGCGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCGATCATTCTTATTGGAGTTGGAGACGGGCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCTCGAGATTTCGATAATTTTCAGTTTGTTAACTTCACTGAAATCATGTCCAAAAACGTCAACACGCCTGAAAAAGAAGAAGCAGCTTTTGCTCTAGCTGCACTTATGGAAGTTCCTTTACAATACAAAGCCGTCGTAGAAATGAATCTTATAGGGCATGCAACTGGAAAAGCGAAAAGAATGCTTCCACAACCCCCGCCGATGCGTCATACTCGTCCGGTACAACTTACTCCCAGGCCCAGCAACACTCCCATACCCAGCAACACCTCCTCCTCAGCTTCTGCATCTGATGATCATAGTCAGGTCTGCCCCATTTGTTTGACTGAGGCGAAGGATCTAGCCTTTGGATGCGGCCACATGACCTGTAGAGAATGTGGATCAAAACTATCGAATTGCCATATATGTCGCCAGCCTATCAGAAACCGCATAAGGCTATATACCGGGTGA 1287 47.24 MPLTAWLSNMGNLINSSSKRRGGGEKAVKATREPSLKKAGRSNSGGGGSSRGKPSRWFEKKASFRKKYGFIADNFSSIDQVTEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHSISDSPNPYEKALSIIGKTLAPFDDDGLIPCFGFGDATTHDQEVFSFHSDHSSCHGFEEVLNCYKRIVPNVQLSGPTSYGPVVEAAMDIVEKSNGQFHILLILADGQVTRSSSIGDGELSVQEEKTIKAIVDASAYPLSIILIGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNVNTPEKEEAAFALAALMEVPLQYKAVVEMNLIGHATGKAKRMLPQPPPMRHTRPVQLTPRPSNTPIPSNTSSSASASDDHSQVCPICLTEAKDLAFGCGHMTCRECGSKLSNCHICRQPIRNRIRLYTG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42525306 42535651 - Sed0018347.1 Sed05g3319 715945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3319 428 PANTHER COPINE FAMILY PROTEIN 1 54 426 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Sed05g3319 428 MobiDBLite consensus disorder prediction 338 378 - -
Sed05g3319 428 MobiDBLite consensus disorder prediction 14 56 - -
Sed05g3319 428 Pfam Copine 117 332 IPR010734 -
Sed05g3319 428 SUPERFAMILY RING/U-box 379 421 - -
Sed05g3319 428 Pfam Zinc finger, C3HC4 type (RING finger) 380 421 - -
Sed05g3319 428 ProSiteProfiles Zinc finger RING-type profile. 383 416 IPR001841 -
Sed05g3319 428 SMART VWA_4 92 295 IPR002035 -
Sed05g3319 428 MobiDBLite consensus disorder prediction 22 36 - -
Sed05g3319 428 SUPERFAMILY vWA-like 94 275 IPR036465 -
Sed05g3319 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 427 IPR013083 -
Sed05g3319 428 MobiDBLite consensus disorder prediction 355 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3319 Sed-Chr5:42525306 Sed11g1886 Sed-Chr11:33424990 1.30E-122 dispersed
Sed05g3319 Sed-Chr5:42525306 Sed12g2484 Sed-Chr12:34410322 7.30E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3319 K16280 - csv:101218058 645.195