Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3323 ATGGACGGAGATCAGCCGCCGGCGACGGCGCCGGCACCGCCCACGTTGGCCATCCACCCAGCCGTAGCGCCATTATCATTCTTACTTGGAACATGGAGAGGCAAAGGCGAGGGTGGATTTCCCACCATCAATTCCTTCTCTTACGGCGAGGAGCTCCATTTCTCCCATTCCGGCAAGCCAGTGATTTCTTACACTCAGAAGACTTGGAAGCTTGATTCTAGAGAGCCTATGCACGCCGAGAGTGGCTATTGGCGTCCCAAGCCGGATGGTTCCATTGAGGTAGTCATCGCGCAAAGCACTGGTCTCGTTGAACTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAAAGCTCCAAAGTGAACTTGTGGGGAATGCTTCTAAGGTGAAAGATATAACGAGAGTTTTTAAGCTGGAGGATGGAAACCTTTCCTACGTGGTTCAGATGGCTACCGGCTTAACCAGTCTTCAACCACACTTAAAAGCCTTGCTTTCTAAGGTTTGA 507 50.1 MDGDQPPATAPAPPTLAIHPAVAPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSGKPVISYTQKTWKLDSREPMHAESGYWRPKPDGSIEVVIAQSTGLVELQKGTYNAEEKVIKLQSELVGNASKVKDITRVFKLEDGNLSYVVQMATGLTSLQPHLKALLSKV 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42577390 42581321 - Sed0001463.1 Sed05g3323 715949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3323 168 SUPERFAMILY Lipocalins 18 168 IPR012674 -
Sed05g3323 168 Gene3D - 17 168 IPR012674 -
Sed05g3323 168 CDD lipocalin_heme-bd-THAP4-like 22 168 IPR014878 -
Sed05g3323 168 PANTHER THAP4 PROTEIN 9 168 IPR045165 -
Sed05g3323 168 Pfam THAP4-like, heme-binding beta-barrel domain 22 167 IPR014878 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3323 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1189 . . . . . . . . . . . . . . . . Cpe16g00699 . . . . . . . Cla02g01845 Cam02g1952 Cec02g1980 Cco02g2018 Clacu02g1934 Cmu02g1883 Cre02g2194 . . . . . . . Cme11g01662 . . . . . . . . Sed05g3323 . . . . . . . . Bhi10g00914 Tan05g0568 Cmetu11g1408 . Hepe08g0663 . . . . . . . . . . Csa06g01135 Chy11g01057 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014028 0 1 0 0 0 1 1 0 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 23