Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3326 ATGATTCTACGCTCCCAATCGTCCTCTGTTTTCACGATTTCCTCTACTGTTACTGATAATCACAGCTACAAGTATCACCGCCAGCAACTTCAGCTTCGTCACTACGGCGGTGGAGCTTGTTTTCATGTTCGTGCAACGGCGGCGGTCATGGCCGTTTCCAGCGGCGGAAGCCTCGCTAGACGGAAATCTAGGAGGAGTCGTTTCGTGAATGTTAGGTTTTCTGCAACTGGCTCCGATTTGTCCTCTTCGACTCCGCCGCTGGATGCTCAAACGCCTGGTTCAGGTCCAGATAAGAATGAGGAAGTTCAGAGGCCTGGACCTGATCCGAAAACGCTGCTGAAGAGGTTTTGGAAGGTTGCTGCACCGTACTGGTTCTCGGATGATAAAGTTCAAGCTCGATGGCAACTGGCTGCTGTTTTCGCTCTGACCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTCGGCCGCGACTTCTACAACGCTCTTGCTAATAAGGACCAAGAACAGTTCACTAAGCAACTTCTCTACTACCTTGGCGCCTTTGCTGGAGGTATTCCGGTTTTCGTATTTAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGATCATGGATGACAAAACATTACATGGAGCGTTATTTAAAGAAACAGTCTTTCTACAAAATTCAGTCCCAGTCCATAATTGACAATCCTGACCAGCGGATTGTTGATGATGTCAGTTCTTTCACAGGGACAGCTTTGTCATTTTCTTTGGCACTTTTCAATTCTACAGTGGATTTAATTTCATTTAGTAACATCTTGTTTGGTATCTATCCACCCTTGTTTGTCATCCTTCTTGTATATTCAATTGGAGGAACGGCAATTAGTGTTTTCCTTGGAAAGGGTTTAGTCAATCTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTCCGCTATGGACTTGTTCGCATTCGTGAAAATGCCGAATCAATTGCTTTCTATGGTGGTGAAGAAAATGAGATGCAGCTTATTCTGCAGCGTTTCAGAAGTGCAGTTGAAAATTTGACTAAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTACCGCTACCTCATTCAAATTCTCCCAGCTGCCGTTGTTGCCCCAATGTTCTTTTCTGGCAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTTAATCACATCCTCGGGGATTTTTCCATCATTGTATACCAGTTTCAGGCCATCAGTGCCTTTTCAGCAATTATTGATCGCCTAGGCGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCGAACACCACAGAAGAGATACATCTCATGTACTCCCACATGGAAAGTTCACCTCTATTAGAATCAAATGGATCCGTGACTCTAGAACGCCGGAAATTAATGGAGATAGAGAATTTGACTTTAGGGGCACCAAATGGAGATACTTTGGTCAAAGACTTGGCATTAGTAGTTAAAGAAAATGAGCATTTGCTGGTAATGGGACCTAGTGGATGTGGCAAGACTTCTTTGTTAAGAGTATTGGCAGGTCTTTGGAATGTTGGAAAAGGAAAAATCACATTCTATATTAAAGACTATCCCGAGCAGCTAGCATCTCAAAATGGAGTGCCCACAAAATCATATACAGGTGAAGATGTATCCCAAGAAAATAGTAGACCACTCAACAAAAATTATCAAGGAATATTTTTCCTTCCTCAAAGACCATACATGGTTTTGGGTACACTACGCGAGCAACTGCTTTATCCTACATGGGCCGATGGTGCAGTCACATCCGGTTCTGCCGAACCAAATGTATTCCCTTCCTTTTTGACGGGTACATCAAATATCAACAAAGTTGGTGAAAATCCCAACAAGCCAACAACAGATGACCTGATCCAGGTTCTGGACAAAGTCGGTCTTGGCTACTTAATGACTCGTTTCAGTAGTCTGGACAAAATTTGCGAATGGTCGAGTGTTCTTTCTCTCGGCGAGCAGCAACGTATTGCATTTGCACGTCTATTGCTTTCAAGACCAAAGCTAGTCCTGCTAGACGAGTCCACAAGTGCTTTAGATGAAGCTAATGAGGCACGTTTATACAAGCAAATTGCAGCAGCTGGAATAACATATATCAGCGTTGGCCATCGAAAAACTTTACGCAATCACCATAACACTATTTTGCATATATCCGAGTTTTCTAGTGGCAATCAATGCAACTGGAACGTTGAACCCATTATTCGTGATGATTTGTACGAATTATCGAAGCAGTAA 2292 43.06 MILRSQSSSVFTISSTVTDNHSYKYHRQQLQLRHYGGGACFHVRATAAVMAVSSGGSLARRKSRRSRFVNVRFSATGSDLSSSTPPLDAQTPGSGPDKNEEVQRPGPDPKTLLKRFWKVAAPYWFSDDKVQARWQLAAVFALTLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVFRDYAKDMLSLRWRSWMTKHYMERYLKKQSFYKIQSQSIIDNPDQRIVDDVSSFTGTALSFSLALFNSTVDLISFSNILFGIYPPLFVILLVYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMFFSGKIEFGVINQSVSAFNHILGDFSIIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTTEEIHLMYSHMESSPLLESNGSVTLERRKLMEIENLTLGAPNGDTLVKDLALVVKENEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLASQNGVPTKSYTGEDVSQENSRPLNKNYQGIFFLPQRPYMVLGTLREQLLYPTWADGAVTSGSAEPNVFPSFLTGTSNINKVGENPNKPTTDDLIQVLDKVGLGYLMTRFSSLDKICEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAAAGITYISVGHRKTLRNHHNTILHISEFSSGNQCNWNVEPIIRDDLYELSKQ 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42594114 42600237 + Sed0019803.1 Sed05g3326 715952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3326 763 ProSitePatterns ABC transporters family signature. 668 682 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g3326 763 Gene3D - 466 744 IPR027417 -
Sed05g3326 763 Gene3D ABC transporter type 1, transmembrane domain 96 434 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g3326 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 737 IPR027417 -
Sed05g3326 763 CDD ABCD_peroxisomal_ALDP 477 737 - -
Sed05g3326 763 SMART AAA_5 502 740 IPR003593 GO:0016887(InterPro)
Sed05g3326 763 SUPERFAMILY ABC transporter transmembrane region 110 431 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed05g3326 763 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 78 750 IPR050835 -
Sed05g3326 763 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 420 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g3326 763 MobiDBLite consensus disorder prediction 76 109 - -
Sed05g3326 763 Pfam ABC transporter 494 696 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g3326 763 Pfam ABC transporter transmembrane region 2 125 385 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed05g3326 763 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 477 763 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed05g3326 763 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3326 Sed-Chr5:42594114 Sed13g0907 Sed-Chr13:6793303 4.90E-43 dispersed
Sed05g3326 Sed-Chr5:42594114 Sed05g3335 Sed-Chr5:42636527 6.30E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3326 - - - 0.0