Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g3340 | ATGGATCTTCTCCTCTTGGAGAAGACTCTAATCGGCCTCTTCGTCGCCGTCGTTCTCGCCATCGCCATTTCCAAGCTTCGCGGCAAGCGGTTCAAGCTTCCGCCGGGGCCGTTGCCGGTGCCGATCTTCGGAAACTGGCTCCAGGTTGGCGATGACTTGAATCACCGAAATCTGACGGATCTCGCTAAGAAATTCGGCGATATCTTAATGCTTCGGATGGGACAGAGGAACCTCGTGGTGATTTCCTCGCCGGAACTGGCGAAGGAAGTTCTCCACACGCAGGGAGTCGAGTTCGGATCTCGAACCAGAAACGTCGTTTTCGATATCTTCACCGGAAAAGGTCAGGATATGGTTTTCACCGTTTATGGCGAGCACTGGAGGAAGATGAGACGGATCATGACGGTTCCGTTTTTCACGAACAAAGTTGTGCAGCAGTATCGTTACGGATGGGAGGACGAGGCTGCAAGCGTGGTTGAGGACGTGAAGAAGAATCCGGAATCTGCAACGACTGGAATCGTTCTTCGGCGGCGATTGCAGCTTTTGATGTACAATAATATGTACAGGATTATGTTCGATCGAAGATTCGAGAGTGAGAATGATCCTTTGTTTCAGAAACTTAGGGCTCTGAATGGAGAGAGGAGCCGATTGGCGCAGAGCTTCGAATATAACTATGGCGATTTCATCCCGATCTTGAGACCGTTCTTGAGAGGATATCTGAAAATCTGCAAGGAAGTTAAGGAAACGAGGCTGAAATTGTTCAAGGATTATTTCGTCGATGAGAGGAAGAAAATATCGAGCACCAAGAGCACGACGAACGAGGGATTGAAATGTGCGATTGATCATATATTGGATGCACAACAGAAAGGAGAAATCAACGAAGACAATATGCTTTACATTGTTGAAAATATCAATGTTGCAGCAATTGAAACAACATTATGGTCAATTGAATGGGGAATTGCCGAGTTAGTGAACCACCCTAAGATCCAAACCAAACTGAGGAACGAAATTGACACAATTCTCGGACCGGGTGTACAAATCACCGAGCCTGACACACACAAGCTCCCATACCTACAAGCCGTGATCAAGGAAACTCTCCGTCTGCGCATGGCCATCCCATTGCTAGTGCCTCACATGAACCTCCACGATGCCAAGCTCGGTGGCTTCGACATTCCTGCCGAGAGCAAGATCTTGGTTAACGCCTGGTGGCTGGCTAACAACCCTGCAAACTGGAAGAACCCAGAGGAGTTTCGGCCTGAGAGATTCTTGGAGGAAGAGGCCAAGGTTGAAGCCAATGGCAATGATTTTCGATATCTGCCGTTCGGCGTCGGGAGAAGGAGCTGCCCAGGTATTATCTTGGCTTTGCCAATTCTTGGAATTACGATTGGGCGATTGGTACAGAACTTTGAGCTTCTGCCTCCTCCCGGACAATCGAAGTTGGATACCTCAGAGAAAGGTGGGCAGTTTAGCTTGCACATTTTGAAACATTCCACCATTGTCGCTAAGCCCAGGGCGTTCTAG | 1518 | 48.75 | MDLLLLEKTLIGLFVAVVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDILMLRMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEDEAASVVEDVKKNPESATTGIVLRRRLQLLMYNNMYRIMFDRRFESENDPLFQKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVDERKKISSTKSTTNEGLKCAIDHILDAQQKGEINEDNMLYIVENINVAAIETTLWSIEWGIAELVNHPKIQTKLRNEIDTILGPGVQITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVAKPRAF | 505 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 42700154 | 42702446 | + | Sed0002670.1 | Sed05g3340 | 715966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 358 | 376 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 399 | 423 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | FunFam | Trans-cinnamate 4-monooxygenase | 23 | 497 | - | - | |
| Sed05g3340 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g3340 | 505 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | P450 superfamily signature | 359 | 370 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | CDD | CYP73 | 63 | 496 | - | - | |
| Sed05g3340 | 505 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 1 | 504 | - | GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER) | |
| Sed05g3340 | 505 | Gene3D | Cytochrome P450 | 23 | 496 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | Pfam | Cytochrome P450 | 34 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3340 | 505 | SUPERFAMILY | Cytochrome P450 | 34 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g3340 | Sed-Chr5:42700154 | Sed11g0602 | Sed-Chr11:7066949 | 2.60E-189 | dispersed | |
| Sed04g0239 | Sed-Chr4:1778320 | Sed05g3340 | Sed-Chr5:42700154 | 1.60E-244 | transposed | |
| Sed01g0798 | Sed-Chr1:5911669 | Sed05g3340 | Sed-Chr5:42700154 | 4.40E-282 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g3340 | K00487 | - | csv:101221846 | 948.347 |