Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3342 | ATGCAAGATCCAGCGTCTTCAACCCCAATCCACACTCCCAATTCCAATCAAATTCCTCCGTTCAATGCTGCTGCACCGCCGCCGGCACTAGCTCCGGCGCCGGCGAGGACTCACAAACCGCCGCCAGTGGCGAACGCCACGGTCTCCTCGTCGATGTTTGCCAGTAATGGTTCGTTTGTGCCTAGAGCTGGTTCTCATCATCGGAGGGCTCACTCGGAAGTTAGCTTCCGGTTGCCGGAGGATATGATGGATCTTTCCGGCTCGGATCCGTTCAATGGCGGCTCGTCGACGGCTAGCATGGAGGAGATCGGATCGGAGGACGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGATTTTCGTGGATCATAATAATGCTAACGGTGGAAGTGAAGGCGGCGGCGGCGGTGGTAGTGAGGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAACGACGTCGTCGTTGTCGAGCTTGTTTGGGGAGATTATGGATGCCAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGAGCACTGACCCTAAACGCGCCAAAAGGATATTGGCAAATCGACAATCTGCTGCTCGCTCGAAAGAGAGGAAGGCACGATATATACAAGAGTTGGAGCGCAAAGTGCAGTCCCTTCAAACAGAAGCAACTACTCTATCAGCCCAACTGACTCTGTTCCAGCGAGACACAACAGGTCTCAGTACTGAGAATACAGAACTTAAGTTTCGATTGCAAGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGACGCGTTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACCGGGGAAATGATGAGCCATTCCGAGTCTTTTAACTTGGGAATGCATCACGCAACTTACGCCCCACCATCTTACATTCAACTTTCACAGCAAGCAGGAGTTGCAGGCCATCAAAATATGCAAATGCCACCATATAACCATTCCCCACCTAACATGTCTAGCCATCCTATGCATCCATCAGACTCTCATTCTCTCTCAGAGGTTCTGGAGAGCGACTCTCTTGGCCGATTACAGGGTCTCGACATTAATAACAAAGGATCGTTGGCTATGAAATCCGAGGGCCCTTCAATCTCTGCCAGTGAGAGCAGTACAACCTTTTGA | 1185 | 50.89 | MQDPASSTPIHTPNSNQIPPFNAAAPPPALAPAPARTHKPPPVANATVSSSMFASNGSFVPRAGSHHRRAHSEVSFRLPEDMMDLSGSDPFNGGSSTASMEEIGSEDDLFSTYIDVKKLGGNGGGIFVDHNNANGGSEGGGGGGSEGEKTSKPRHRHSVSVDGTTSSLSSLFGEIMDAKKAMPPDKLAELWSTDPKRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQRDTTGLSTENTELKFRLQAMEQQAQLRDALNDALKKEVERLKIATGEMMSHSESFNLGMHHATYAPPSYIQLSQQAGVAGHQNMQMPPYNHSPPNMSSHPMHPSDSHSLSEVLESDSLGRLQGLDINNKGSLAMKSEGPSISASESSTTF | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42715804 | 42719519 | + | Sed0011538.1 | Sed05g3342 | 715968 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3342 | 394 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 194 | 257 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3342 | 394 | CDD | bZIP_plant_RF2 | 197 | 246 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 373 | 394 | - | - | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 129 | 165 | - | - | |
Sed05g3342 | 394 | SUPERFAMILY | Leucine zipper domain | 196 | 247 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 377 | 394 | - | - | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 328 | 355 | - | - | |
Sed05g3342 | 394 | Gene3D | - | 195 | 248 | - | - | |
Sed05g3342 | 394 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 43 | 343 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed05g3342 | 394 | SMART | brlzneu | 192 | 256 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3342 | 394 | Coils | Coil | 212 | 239 | - | - | |
Sed05g3342 | 394 | FunFam | probable transcription factor PosF21 | 195 | 248 | - | - | |
Sed05g3342 | 394 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
Sed05g3342 | 394 | Pfam | bZIP transcription factor | 196 | 244 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0800 | Sed-Chr1:5921394 | Sed05g3342 | Sed-Chr5:42715804 | 4.70E-78 | dispersed | |
Sed04g0332 | Sed-Chr4:2482575 | Sed05g3342 | Sed-Chr5:42715804 | 6.70E-77 | dispersed | |
Sed04g2954 | Sed-Chr4:41036407 | Sed05g3342 | Sed-Chr5:42715804 | 5.40E-71 | dispersed | |
Sed05g3342 | Sed-Chr5:42715804 | Sed10g2108 | Sed-Chr10:37574587 | 2.20E-47 | dispersed | |
Sed04g0236 | Sed-Chr4:1758993 | Sed05g3342 | Sed-Chr5:42715804 | 1.90E-87 | transposed | |
Sed01g0799 | Sed-Chr1:5921394 | Sed05g3342 | Sed-Chr5:42715804 | 6.70E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38713 | PF00170 | bZIP_1 | 2.50E-08 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3342 | - | - | - | 0.0 |