Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3342 ATGCAAGATCCAGCGTCTTCAACCCCAATCCACACTCCCAATTCCAATCAAATTCCTCCGTTCAATGCTGCTGCACCGCCGCCGGCACTAGCTCCGGCGCCGGCGAGGACTCACAAACCGCCGCCAGTGGCGAACGCCACGGTCTCCTCGTCGATGTTTGCCAGTAATGGTTCGTTTGTGCCTAGAGCTGGTTCTCATCATCGGAGGGCTCACTCGGAAGTTAGCTTCCGGTTGCCGGAGGATATGATGGATCTTTCCGGCTCGGATCCGTTCAATGGCGGCTCGTCGACGGCTAGCATGGAGGAGATCGGATCGGAGGACGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGAGGAGGGATTTTCGTGGATCATAATAATGCTAACGGTGGAAGTGAAGGCGGCGGCGGCGGTGGTAGTGAGGGGGAGAAGACTTCGAAGCCAAGGCATCGGCATAGCGTTTCGGTGGACGGAACGACGTCGTCGTTGTCGAGCTTGTTTGGGGAGATTATGGATGCCAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGAGCACTGACCCTAAACGCGCCAAAAGGATATTGGCAAATCGACAATCTGCTGCTCGCTCGAAAGAGAGGAAGGCACGATATATACAAGAGTTGGAGCGCAAAGTGCAGTCCCTTCAAACAGAAGCAACTACTCTATCAGCCCAACTGACTCTGTTCCAGCGAGACACAACAGGTCTCAGTACTGAGAATACAGAACTTAAGTTTCGATTGCAAGCTATGGAGCAACAAGCCCAATTGCGTGATGCTTTGAACGACGCGTTAAAGAAGGAAGTTGAGAGGCTTAAAATCGCTACCGGGGAAATGATGAGCCATTCCGAGTCTTTTAACTTGGGAATGCATCACGCAACTTACGCCCCACCATCTTACATTCAACTTTCACAGCAAGCAGGAGTTGCAGGCCATCAAAATATGCAAATGCCACCATATAACCATTCCCCACCTAACATGTCTAGCCATCCTATGCATCCATCAGACTCTCATTCTCTCTCAGAGGTTCTGGAGAGCGACTCTCTTGGCCGATTACAGGGTCTCGACATTAATAACAAAGGATCGTTGGCTATGAAATCCGAGGGCCCTTCAATCTCTGCCAGTGAGAGCAGTACAACCTTTTGA 1185 50.89 MQDPASSTPIHTPNSNQIPPFNAAAPPPALAPAPARTHKPPPVANATVSSSMFASNGSFVPRAGSHHRRAHSEVSFRLPEDMMDLSGSDPFNGGSSTASMEEIGSEDDLFSTYIDVKKLGGNGGGIFVDHNNANGGSEGGGGGGSEGEKTSKPRHRHSVSVDGTTSSLSSLFGEIMDAKKAMPPDKLAELWSTDPKRAKRILANRQSAARSKERKARYIQELERKVQSLQTEATTLSAQLTLFQRDTTGLSTENTELKFRLQAMEQQAQLRDALNDALKKEVERLKIATGEMMSHSESFNLGMHHATYAPPSYIQLSQQAGVAGHQNMQMPPYNHSPPNMSSHPMHPSDSHSLSEVLESDSLGRLQGLDINNKGSLAMKSEGPSISASESSTTF 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42715804 42719519 + Sed0011538.1 Sed05g3342 715968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3342 394 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 257 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3342 394 CDD bZIP_plant_RF2 197 246 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3342 394 MobiDBLite consensus disorder prediction 373 394 - -
Sed05g3342 394 MobiDBLite consensus disorder prediction 1 48 - -
Sed05g3342 394 MobiDBLite consensus disorder prediction 129 165 - -
Sed05g3342 394 SUPERFAMILY Leucine zipper domain 196 247 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3342 394 MobiDBLite consensus disorder prediction 377 394 - -
Sed05g3342 394 MobiDBLite consensus disorder prediction 1 19 - -
Sed05g3342 394 MobiDBLite consensus disorder prediction 328 355 - -
Sed05g3342 394 Gene3D - 195 248 - -
Sed05g3342 394 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 43 343 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g3342 394 SMART brlzneu 192 256 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3342 394 Coils Coil 212 239 - -
Sed05g3342 394 FunFam probable transcription factor PosF21 195 248 - -
Sed05g3342 394 MobiDBLite consensus disorder prediction 20 39 - -
Sed05g3342 394 Pfam bZIP transcription factor 196 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0800 Sed-Chr1:5921394 Sed05g3342 Sed-Chr5:42715804 4.70E-78 dispersed
Sed04g0332 Sed-Chr4:2482575 Sed05g3342 Sed-Chr5:42715804 6.70E-77 dispersed
Sed04g2954 Sed-Chr4:41036407 Sed05g3342 Sed-Chr5:42715804 5.40E-71 dispersed
Sed05g3342 Sed-Chr5:42715804 Sed10g2108 Sed-Chr10:37574587 2.20E-47 dispersed
Sed04g0236 Sed-Chr4:1758993 Sed05g3342 Sed-Chr5:42715804 1.90E-87 transposed
Sed01g0799 Sed-Chr1:5921394 Sed05g3342 Sed-Chr5:42715804 6.70E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38713 PF00170 bZIP_1 2.50E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3342 - - - 0.0