Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3346 ATGTTTAATAATATTCGAGCTGGGAATTCCAGCAGTAATCTTCAAAGCTCCAATTCGGAGTTTGGGTATGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTTTGGGAAAAGGTGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGACTAGAGGTGGCATGGAGTCAGGTGAAACTCAACGAAGTCCTCCGATCTCCTGATGATTTGCAGCGGTTGTATTCGGAGGTTCACTTACTTAGCACACTTAAGCACGGATCAATTATGCGATTTTACACCTCTTGGATCGATGTTGAACACAAAACCTTCAACTTCATCACCGAACTGTTTACTTCTGGAACACTTAGAGAATATGTAAAGAAATATAGGCGAGTTGATATTAGAGCCATTAAGAGTTGGGCACGCCAGATCCTGAAGGGGCTCATTTATTTGCACGAGCATGATCCTCCGATAATACACCGAGATTTGAAGTGCGATAACATCTTTGTAAATGGCCATCTTGGGCAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCACCGGAATTATACGAGGAGAATTACAATGAGCTAGTTGATGTCTACTCGTTTGGCATGTGTGTTATGGAGATGCTTACTGCTGAGTATCCGTATAGCGAGTGTTCTAATCCCGCACAGATTTACAAGAAAGTCACATCGGGGAAGCTTCCAGCAGCATTGTACAAGATTCAAGACATGGAAGCGCAGAGATTTATTAAGAAATGCTTGGTACCGGCATCGATGAGGGCGTCTGCAAAGGAACTGTTGGCTGATTCTTTTCTCATGGTTGATGGAGACAGACCTTCATCAAAGGAGAATAATCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACCTGGGTGAAGGTTTAAGCAGGACGAAGATGACGATCACGGGGAAGCTGAACCCCGAAGATGATACTCTCTTTCTCAGAGTTCAGACTGCAGATAAAAATGGCTCTCCTAGGAACATTTACTTCCCCTTCGACATAGTAAACGACACAGCCATAGATGTGGCGATGGAGATGGTGAAGGAGTTGGAGATCTCTGATTGGGAGCCGTTCGAAATAGCAGACATGATCGAAGGAGAGATATCGGCTCTGGTTCCGAACTGGAATAGAAGTGAGTTATCCAATCATAGCCTCGGCTATGCAGAAGACGATGTTGCATCTCATCATACTTTTCGCTCCATCTCCTCATCGTCTCATGCATCAACTTTGGGTCTCATTGCCTCCCCAAGAACAAATCAAAACATATCTAACGGTTTTAGTTGGTTCCCAGATGACACCCTTGATGATAGCAGTTCACAGTGCTCATCAGCATCAGGAACATACTCCAACTTGAATTACATCAGCAGCGACGAGTACGAGACGAGTATGAATTCGGTTGGAACAGACCAACAAAACAACATCAGTAAGATTCACAACTCCTCAAGGTTTTGTCCCATTGAGAACCGCAAAAACAAGGACTTTTTGGCTGGATTTTTATACAAGCAGAGCCAATGTGCTGTAGGGCCATCTCTTGGAGCTGCCGCTGGGCGCCAAGACAAGAGAGGAGGATCCGATGGCCGCAAACTAACACGAAACAGATCACTAGTTGATGTACACAGCCAATTGTTGCACCGTTCATTGGTCGAGGAAGTGAATAGAAGGCGGTTATTCAAGACGGTTGGAGCGGTTGAAAGCATCGGTTTTCAAGCACCTTGTGAGGTTTCCTCCAGCAAAAAGGCATCGAGTAGTTGGCAACCAATAGGGAACCGAAGTGGCGATGTAGCGAGAACCGGGAGAAACACCGATGTTAGAAGGAGAACATGA 1917 45.17 MFNNIRAGNSSSNLQSSNSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGLEVAWSQVKLNEVLRSPDDLQRLYSEVHLLSTLKHGSIMRFYTSWIDVEHKTFNFITELFTSGTLREYVKKYRRVDIRAIKSWARQILKGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVMEMLTAEYPYSECSNPAQIYKKVTSGKLPAALYKIQDMEAQRFIKKCLVPASMRASAKELLADSFLMVDGDRPSSKENNQNQKPFLNAKEMEKLHLGEGLSRTKMTITGKLNPEDDTLFLRVQTADKNGSPRNIYFPFDIVNDTAIDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELSNHSLGYAEDDVASHHTFRSISSSSHASTLGLIASPRTNQNISNGFSWFPDDTLDDSSSQCSSASGTYSNLNYISSDEYETSMNSVGTDQQNNISKIHNSSRFCPIENRKNKDFLAGFLYKQSQCAVGPSLGAAAGRQDKRGGSDGRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKKASSSWQPIGNRSGDVARTGRNTDVRRRT 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42770115 42774218 + Sed0009548.1 Sed05g3346 715972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3346 638 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
Sed05g3346 638 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3346 638 MobiDBLite consensus disorder prediction 610 638 - -
Sed05g3346 638 Gene3D Transferase(Phosphotransferase) domain 1 116 295 - -
Sed05g3346 638 CDD STKc_WNK 31 291 - -
Sed05g3346 638 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Sed05g3346 638 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
Sed05g3346 638 FunFam Probable serine/threonine-protein kinase WNK1 17 114 - -
Sed05g3346 638 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 16 597 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed05g3346 638 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3346 638 MobiDBLite consensus disorder prediction 610 627 - -
Sed05g3346 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3346 638 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3346 Sed-Chr5:42770115 Sed14g0580 Sed-Chr14:5812680 1.50E-157 dispersed
Sed05g3346 Sed-Chr5:42770115 Sed09g0759 Sed-Chr9:14561273 1.90E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79283 PF00069 Pkinase 2.90E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3346 K08867 - csv:101203757 1101.27