Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3353 ATGGCCATGTCTCTTCTCACCCTCCTCACCCTCCTCTTCCTATTCTCCTCTCCCTCCTCCGCCGTCCCCGGCCCCATCCCGACCGCGGAGATTTGCCGATCCACAACCTCCCCATTCTTTTGCAAATCCTTCCTTCCAAACACTCCAAACACCGTCCACTCCCATTGTCGCTTCACACTCCACCACGCCCTCACCCACGCACGCACCTTCCTCACCCTCGTCGACACCCACTCGACTCTCTTCCCGTCCATCTCCGCCCTCCAAGACTGTCACTCTCTCGCAGCGGCAAACCTCGAGTTCCTATCGAACACGGTCCTCACAGTAACCACATCCAGCAATGTCCTCGGCTTCTACGAAGCCGATGAGATCGTGTCGCTGCTTAGCGCCGTGATCACGAATGTAGAGACTTGTTATGAAGGGCTGGTGGGCTCGGACGTGGGCTCGGGCTTGGTTGATAAGGTTGTGAATGCAATCTCGTTTGATAAAAAGCTTTACAGTTTGTACCTTTCTTTGTTCAAATTGGGCTGGGTTTCTGAAGACGAAATGGCTCCTAAGTTGCCCAAAGTTAACCATTTTGGGCTCGGGAATGGGGCGCTGAAGCTGAAGATGTCGCCTAACAACCGTGCCTATTATGACCACATGGTTCGTAGGAAGAAGCCCGCGGCTCGAAGGCTGACCGACTCAACTGATGAGGATGGAATTTTGGTCAATGGCATTGTTGGGGTGGACAAAAATGGAGCATACAACTTCACGAGCATCAACGCGGCCATTGCGGCAGCTCCGACCAAAACCACGGCGGCGAAAGGGTACTTCTTGATCTTCGTTGCCGCCGGCATTTACAACGAAAGTGTTTTGGTTCCTAAGAACAAAAATTACATATTGATGATCGGAGAAGGTAACAACCAAACCATCATCACCGGCAACAATAACGTCGTCGACGGCTCCACCACTTTCAACAGCGGAACCGTCATTGTGGAGGGAACAAGGTTCTTTGGAGTGAACCTAACAATATCAAACACGGCTGGTGCCATAAAGCACCAAGCCGTCGCACTGCGTGTGAGCGCGGACATGACAGTGTTCTACTCTTGCATATTCGAAGGTTACCAAGACACTCTATACACTCACTCCCTTCGTCAATTCTATAGAGAGTGTGACATTTATGGAACTGTCGATTTTATCTTCGGTAACGCTGCTGTTGTCCTCCAAAACTGCAACCTCTATGCCCGCCTTCCATTGAGTGGCCAGTTTAACGCCCTCACAGCGCAAGGCCGAACTGACCCGAATCAGAACACTGGCACCTCTATCCACAACTGCAGTATCAAGGCCACTCCAGAGCTTGCAGCCAGCCCTAAGACGAAGAGCTACTTGGGTCGACCGTGGAAGGAATATTCTCGAACCGTTTACATGGAGTCGCTTATCGATGCATTCATCGACCCTGCAGGTTGGAAGGAGTGGGATGGGACTTTGAATTTGAACACGTCGTATTACGCTGAGTTTAATAACTTTGGGCTAGGATCGGACACTTTGCGAAGGGCTCAATGGGCGGTCGGCGTGATTGACCCCACGACAGCTAATAACTTCACCGTGTCGACCTTCTTAGCTGGAGATCAATGGCTACGGTCGACCATGGTGCCATATACTGGTGGTTTGATATCGTTAACGAAGTAA 1668 51.32 MAMSLLTLLTLLFLFSSPSSAVPGPIPTAEICRSTTSPFFCKSFLPNTPNTVHSHCRFTLHHALTHARTFLTLVDTHSTLFPSISALQDCHSLAAANLEFLSNTVLTVTTSSNVLGFYEADEIVSLLSAVITNVETCYEGLVGSDVGSGLVDKVVNAISFDKKLYSLYLSLFKLGWVSEDEMAPKLPKVNHFGLGNGALKLKMSPNNRAYYDHMVRRKKPAARRLTDSTDEDGILVNGIVGVDKNGAYNFTSINAAIAAAPTKTTAAKGYFLIFVAAGIYNESVLVPKNKNYILMIGEGNNQTIITGNNNVVDGSTTFNSGTVIVEGTRFFGVNLTISNTAGAIKHQAVALRVSADMTVFYSCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYARLPLSGQFNALTAQGRTDPNQNTGTSIHNCSIKATPELAASPKTKSYLGRPWKEYSRTVYMESLIDAFIDPAGWKEWDGTLNLNTSYYAEFNNFGLGSDTLRRAQWAVGVIDPTTANNFTVSTFLAGDQWLRSTMVPYTGGLISLTK 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42806010 42809618 + Sed0013747.1 Sed05g3353 715979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3353 555 FunFam Pectinesterase 235 550 - -
Sed05g3353 555 SUPERFAMILY Pectin lyase-like 236 549 IPR011050 -
Sed05g3353 555 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Sed05g3353 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 174 IPR035513 -
Sed05g3353 555 PANTHER PECTINESTERASE 11 541 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed05g3353 555 SMART PMEI_2 22 171 IPR006501 GO:0004857(InterPro)
Sed05g3353 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 174 IPR035513 -
Sed05g3353 555 Pfam Plant invertase/pectin methylesterase inhibitor 30 169 IPR006501 GO:0004857(InterPro)
Sed05g3353 555 CDD PMEI-like_3 31 173 - -
Sed05g3353 555 Gene3D - 237 550 IPR012334 -
Sed05g3353 555 Pfam Pectinesterase 242 536 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3353 Sed-Chr5:42806010 Sed07g0564 Sed-Chr7:4232363 9.10E-148 dispersed
Sed05g3353 Sed-Chr5:42806010 Sed04g2368 Sed-Chr4:37098954 2.00E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3353 K01051 - csv:101216984 780.4