Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3367 | ATGTCATCCTCTAACTCACCATGTGCGGCGTGCAAATTCCTAAGGCGAAAATGCACCCAAGAATGCGTATTTGCGCCCTATTTCCCCCCGGATCAGCCCCAGAAATTCGCCAACGTGCACAAGGTATTCGGTGCGAGCAACGTCTCGAAGCTGTTGAACGAACTGACGGCGAGCCAGCGCGACGACGCGGTGAACTCCCTCGCCTACGAGGCCGAGTTTCGTCTGCGCGAACCGGTCTACGGCTGCGTAGGCTTCATCTCCATGCTCCAACACCAGCTCAAGAAACTACAAAGCGACCTCTACATTGCCAAGAAGGAGCTCGCCTCGTACATGGGCTCTCCCACGGCCGGGTCCCCTATGCTCCCCATCGCTGCCGCTAGCCCTTCCTCCTACGGATTCCCCCCGCAGCACCCCCACCCGATTCAACAGCAGCTGTTGCTCGAGGCGCAGCAGCAGCGGGACCATCAGGAAATGATGAGGGCGTACGAGATGAAACAAAGCCAGCAGCGGTTCAGCGGGGGGTTCGACGGGAGCGCGTATAATCATCAAGTGAACAACAACGCGGGCGGGTCGAGTTTGACATTGGGGACATTTGTGGATAACAATAGCTACCAAATTCAATCCCCAACTCATCCGCAGCAGCAGCAGCAGCAACCACTTGAGGTTCAGTTGTTTCTTCAGCCACAACAAGTGGAGCAGCAAATGAAGCCACAACAAACCACTGCAGATGATCATGATCTTCATGGTAGGAATATTAACATTGGCCCATCTTGTTAA | 777 | 54.95 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELTASQRDDAVNSLAYEAEFRLREPVYGCVGFISMLQHQLKKLQSDLYIAKKELASYMGSPTAGSPMLPIAAASPSSYGFPPQHPHPIQQQLLLEAQQQRDHQEMMRAYEMKQSQQRFSGGFDGSAYNHQVNNNAGGSSLTLGTFVDNNSYQIQSPTHPQQQQQQPLEVQLFLQPQQVEQQMKPQQTTADDHDLHGRNINIGPSC | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 42875651 | 42876870 | + | Sed0007574.1 | Sed05g3367 | 715993 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3367 | 258 | Coils | Coil | 86 | 106 | - | - | |
Sed05g3367 | 258 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Sed05g3367 | 258 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Sed05g3367 | 258 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
Sed05g3367 | 258 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 207 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g2755 | Sed-Chr3:43982426 | Sed05g3367 | Sed-Chr5:42875651 | 1.60E-47 | dispersed | |
Sed05g3367 | Sed-Chr5:42875651 | Sed12g2463 | Sed-Chr12:34257423 | 4.50E-41 | dispersed | |
Sed10g0092 | Sed-Chr10:575299 | Sed05g3367 | Sed-Chr5:42875651 | 1.50E-35 | transposed | |
Sed01g0080 | Sed-Chr1:743315 | Sed05g3367 | Sed-Chr5:42875651 | 8.70E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38715 | PF03195 | LOB | 2.10E-41 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3367 | - | - | - | 0.0 |