Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3367 ATGTCATCCTCTAACTCACCATGTGCGGCGTGCAAATTCCTAAGGCGAAAATGCACCCAAGAATGCGTATTTGCGCCCTATTTCCCCCCGGATCAGCCCCAGAAATTCGCCAACGTGCACAAGGTATTCGGTGCGAGCAACGTCTCGAAGCTGTTGAACGAACTGACGGCGAGCCAGCGCGACGACGCGGTGAACTCCCTCGCCTACGAGGCCGAGTTTCGTCTGCGCGAACCGGTCTACGGCTGCGTAGGCTTCATCTCCATGCTCCAACACCAGCTCAAGAAACTACAAAGCGACCTCTACATTGCCAAGAAGGAGCTCGCCTCGTACATGGGCTCTCCCACGGCCGGGTCCCCTATGCTCCCCATCGCTGCCGCTAGCCCTTCCTCCTACGGATTCCCCCCGCAGCACCCCCACCCGATTCAACAGCAGCTGTTGCTCGAGGCGCAGCAGCAGCGGGACCATCAGGAAATGATGAGGGCGTACGAGATGAAACAAAGCCAGCAGCGGTTCAGCGGGGGGTTCGACGGGAGCGCGTATAATCATCAAGTGAACAACAACGCGGGCGGGTCGAGTTTGACATTGGGGACATTTGTGGATAACAATAGCTACCAAATTCAATCCCCAACTCATCCGCAGCAGCAGCAGCAGCAACCACTTGAGGTTCAGTTGTTTCTTCAGCCACAACAAGTGGAGCAGCAAATGAAGCCACAACAAACCACTGCAGATGATCATGATCTTCATGGTAGGAATATTAACATTGGCCCATCTTGTTAA 777 54.95 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELTASQRDDAVNSLAYEAEFRLREPVYGCVGFISMLQHQLKKLQSDLYIAKKELASYMGSPTAGSPMLPIAAASPSSYGFPPQHPHPIQQQLLLEAQQQRDHQEMMRAYEMKQSQQRFSGGFDGSAYNHQVNNNAGGSSLTLGTFVDNNSYQIQSPTHPQQQQQQPLEVQLFLQPQQVEQQMKPQQTTADDHDLHGRNINIGPSC 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42875651 42876870 + Sed0007574.1 Sed05g3367 715993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3367 258 Coils Coil 86 106 - -
Sed05g3367 258 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Sed05g3367 258 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Sed05g3367 258 MobiDBLite consensus disorder prediction 236 258 - -
Sed05g3367 258 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2755 Sed-Chr3:43982426 Sed05g3367 Sed-Chr5:42875651 1.60E-47 dispersed
Sed05g3367 Sed-Chr5:42875651 Sed12g2463 Sed-Chr12:34257423 4.50E-41 dispersed
Sed10g0092 Sed-Chr10:575299 Sed05g3367 Sed-Chr5:42875651 1.50E-35 transposed
Sed01g0080 Sed-Chr1:743315 Sed05g3367 Sed-Chr5:42875651 8.70E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38715 PF03195 LOB 2.10E-41 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3367 - - - 0.0