Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3369 ATGGAGGGTGGTGGGTACTGTGTGAAGGAGCAGAGGGCGTGTTTGGAATGGGTGGAAAGGTATTTCAAGGACTGCCTTTGCAATGTGCGAGACGACATGTCGTTCGGGTTCGGTCTGGCGAGTTTGGTCTGTTGGGGCCTGGCTGAACTCCCTCAGATCGTCACCAATTTCCGGTCCAAGTCCAACCACGGCGTCTCTCTTCTCTTCCTCCTCACTTGGGTCGCCGGTGATGTGTTTAATCTTGTGGGCTGTCTTCTTGAACCGGCCACGCTCCCCACTCAGCTCTACACAGCACTGCTTTACACAGTGAATACCATAGTCTTGGTACTGCAAAGTTTGTATTATGATTGCGTCACTACACGGTGCAGCGACCAAAAGAGGAAATCCCTCCAAACGGCGGAAGAGGAAACGGCGCCGTTAAAGATCACGAAGGCCGTTAGCTACGCCGGGATTCCAGTTCCGAAGCCGTCGCCGAAGGCCACTCCTCGCCGGGAATTCTACTACACGTCGGCGAGATCGTTGGCCGGCAGCGATACGCCGCCGTTCCGGTCGTTTCTCCGGCTGCCGAAGAGTGGGCCGTCGGCTCTCGGCCATGACAGCTCATCTTCCGATGATGAATCGGATAACGCCGCCGTGTCGTCCAATTCCTCTGGCACCCAGCCTCGGCCCATTCCTCGATCGGTTGGTTATGGGACATTTTTAGCGGCATCCGTGAATTTGCCATTCCAAAGCAAGGGCTTTCCAGATGGATTTAGAGGAAGGAAACTTCTACAAGAGCATGCAAGTCATAGTGGTTTTGGCCAATTATTGGGTTGGCTTATGGCTGCTATTTATATGGGTGGTAGACTCCCTCAGATTTGGTTAAATATCAAAAGAGGGAGTGTGGAGGGGCTGAATCCTCTCATGTTTGTGTTTGCCTTGATTGCCAATGCCACTTATGTAGCAAGTATATTAGTGAGAAGTACAGAATGGGAGAAAATCAAAGCTAACATGCCATGGCTGCTTGATGCTGTCGTTTGCGTCCTCCTCGACTTATTCATAATTCTGCAGTACATATATTACAGAAGGTTCAGAAGGAAGAGGCAGAGTGGAGGAAGAAACAGCAATGATTATGAAGAAGCAACAAAACATGCAACCTTGTGA 1143 50.83 MEGGGYCVKEQRACLEWVERYFKDCLCNVRDDMSFGFGLASLVCWGLAELPQIVTNFRSKSNHGVSLLFLLTWVAGDVFNLVGCLLEPATLPTQLYTALLYTVNTIVLVLQSLYYDCVTTRCSDQKRKSLQTAEEETAPLKITKAVSYAGIPVPKPSPKATPRREFYYTSARSLAGSDTPPFRSFLRLPKSGPSALGHDSSSSDDESDNAAVSSNSSGTQPRPIPRSVGYGTFLAASVNLPFQSKGFPDGFRGRKLLQEHASHSGFGQLLGWLMAAIYMGGRLPQIWLNIKRGSVEGLNPLMFVFALIANATYVASILVRSTEWEKIKANMPWLLDAVVCVLLDLFIILQYIYYRRFRRKRQSGGRNSNDYEEATKHATL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 42898072 42909459 + Sed0007293.1 Sed05g3369 715995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3369 380 FunFam Vacuolar membrane PQ loop repeat protein 266 364 - -
Sed05g3369 380 SMART ctns 47 78 IPR006603 -
Sed05g3369 380 SMART ctns 280 311 IPR006603 -
Sed05g3369 380 MobiDBLite consensus disorder prediction 192 224 - -
Sed05g3369 380 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 6 362 IPR051415 GO:0016021(PANTHER)
Sed05g3369 380 Pfam PQ loop repeat 34 89 IPR006603 -
Sed05g3369 380 Pfam PQ loop repeat 267 324 IPR006603 -
Sed05g3369 380 MobiDBLite consensus disorder prediction 195 223 - -
Sed05g3369 380 FunFam PQ loop repeat family protein 34 125 - -
Sed05g3369 380 Gene3D - 266 368 - -
Sed05g3369 380 Gene3D - 36 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3369 K23678 - - csv:101208096 623.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3369 Sed-Chr5:42898072 Sed12g1199 Sed-Chr12:8168917 4.90E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3369 . . . . . . . . Bhi10g02233 Tan07g1028 Cmetu11g1847 . Hepe10g0828 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008889 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32