Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3402 ATGACAAACAAAGGAAGAAGCATGCTGAGCTTATTCACAAGCTGTTCTGGTAAGCGACAAATCAAACAAATCCCCTCATCAACCCAACCCAAACACAGGTCCAACTCCTCAGCCTCCTCAAAGCACATCCGCCCAAACTTGGACGAAATCAAATGGGCGTTCGACAAGTTCGACTCCAACAAGGATGGTAAGATCTGCTTTGAGGAGTACAAGGCGGCTCACCGAGCCATGGCAGGGAGCAAAGAGATCTCGGATGCCGAGGCTGCAAAGTCGTTTCAGTTTGTCGATGTGGATGGAGATGGATATGTGGACTTGAAGGAGTTCGTGGAGTTGTACACGATGAGCGGCGGGGAAGTGAAGATGGGGGACATTGAGAGCGCGTTCAAAGTGTACGATTCGAATCGAGACGGGAAGATAAGCGCAGAGGAGGTTATGGAGATCATGAAGACATTAGGGGAGGAAACAAACCTTAAGGCGTGCAGACAAATGGTGAAGGGCGTGGATAGGGATGGGGATGGCTTTATTGATATCAATGAGTTTTCGAAGCTCATGGGGACGTATTCGTTTAAGTGTCAGAATTAA 582 48.45 MTNKGRSMLSLFTSCSGKRQIKQIPSSTQPKHRSNSSASSKHIRPNLDEIKWAFDKFDSNKDGKICFEEYKAAHRAMAGSKEISDAEAAKSFQFVDVDGDGYVDLKEFVELYTMSGGEVKMGDIESAFKVYDSNRDGKISAEEVMEIMKTLGEETNLKACRQMVKGVDRDGDGFIDINEFSKLMGTYSFKCQN 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43135205 43136344 + Sed0008130.1 Sed05g3402 716028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3402 193 ProSitePatterns EF-hand calcium-binding domain. 58 70 IPR018247 -
Sed05g3402 193 ProSiteProfiles EF-hand calcium-binding domain profile. 45 80 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 FunFam calmodulin-like protein 3 117 188 - -
Sed05g3402 193 MobiDBLite consensus disorder prediction 14 42 - -
Sed05g3402 193 CDD EFh 123 184 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 123 184 - GO:0005509(PANTHER)
Sed05g3402 193 CDD EFh 49 111 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Sed05g3402 193 Pfam EF-hand domain pair 124 184 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 Pfam EF-hand domain pair 48 113 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Sed05g3402 193 SMART efh_1 123 151 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 SMART efh_1 87 115 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 SMART efh_1 49 77 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 SMART efh_1 159 187 IPR002048 GO:0005509(InterPro)
Sed05g3402 193 SUPERFAMILY EF-hand 47 184 IPR011992 -
Sed05g3402 193 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Sed05g3402 193 Gene3D - 119 190 - -
Sed05g3402 193 Gene3D - 12 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3402 K13448 - - csv:101205694 288.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3402 Sed-Chr5:43135205 Sed03g1092 Sed-Chr3:6716228 2.10E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011002 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 0 31