Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3422 | ATGTCACAACAAGACTATCATAGGGCGGCGGCGGCGGCGGCCGGAGACTTTTTCACACCTTTTTCCAATCACTTCGACAGATCCTCCCACGAGATCAGCAAGGAGAAGCTCCACCTCCGGCCGTCCTTGGTCGGACTTGACGACAACGACAACGACGACGACGAGAAATACAACCAATCGGTTGGCTATGACTCTACCGGAGTCTTATCCGAAATGTTTAATTTTCCTCCACCCCCTCCTCAAACCGACTGGTACGGGACGCGGGAAGCAATCGACGCGACGGACTCAGCAGTGGCCATGCAGCTTTTTTTAATGAACCCTAACCGACGCTCGCCGTCCCCGCTGCCTGCGCCGACATCCTCAAGCACTCTCCACATGCTTCTTCCAAACGCATCCTCAGCTGGGTGTTTTGGAGAATTTACATGGGGAGCGGTTCCAGAGCAAGAAATTACAGGAGATCATAATTCTTGTAATTCAAACCCTAACGAGTTAGGGCGGCTTTCGTTGTCGTTATCGTCGTCGTTAGAAGCTGCAAAAGCGGAGGAATTGAGATCAATGGGTGACAGCGGGTTACTTTATCAAAACCCCCCTCCTCACCATCCTCAACCTATCTATGTCAACATGCTGAAAACCTCAAAATATGTCAAAGCTGCACAAGAACTGTTGGATGAGTTTTGTAGCTTGAAGATTAACAATAATAATAAAACCAAATCTCATACATCAAACTCCGACAACGGCAACGATGGCGGCGGAGTCTCGCCACCGCCACCACCGGCTTTGTCAACAGCTGATAGGATTGAACATCAAAGGAGGAAGGTCAAACTGCTATCCATGCTTGATGAGGTGGATCAAAGATACAACCATTACTGTGAACAGATGCAAATGGTGATGAATTCTTTCGATGTCGTGATGGGGTACGGAGCAGCGATGCAATACACGGCATTGGCACAGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAGGACACCATATTAGCGCAGCTGAAGCTCAGCTGCGAGATGTTGGGGGAGAAAGATGATGGAAGAGGCTTAGGAATAACTAAGGGAGAGACTCCGAGGCTTAAGTTTTTGGAGAAAAGCTTGAGGCAGCAACGGACCTTCCACCAAATGGGCATCATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCGGTCAACACCTTGCGAGCTTGGCTCTTCGAACATTTTCTTAACCCGTACCCTAGTGATGCTGATAAGCATCTGTTGGCTAAGCAGACTGGTTTATCAAGAAATCAGGTATCCAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGATAGAAGAGATGTACGAACAAGAAGCCAAACAAGTTGATCATACAGATGAACACACACCGCCGCCGTCCTCCGCCGCACCGCCACCGCCTGAAACCACTGATCCCCCCACCGAAAACGACCCTTCAGCCGTCTCGAAAAACCAACCAAACCCAAATCCAAATCAACGGCGATATTCCTCCTCCTCCGCCGTAACCGAGGCGGCGCCTCCTCCTCCGACGGTGTCGCACTGCTTTCCGGCCAACTACTGTGACTCAAACCTGCAGGACACGTGTCGGCGTGTCGGCGTTCTCGCTGCAACTGATCAACAATTCGGGACCACAAGCGGCTCTGCCTCGTCTGACATCTCCGGGCCCACTACACTCATGCGGTTTGGGACCACTGCAGGTGACGTGTCGCTCACCCTAGGTTTACGCCACGCCGGAGCTCCCGACGACCGCCCTTCTTTTTCCGTCATGTCCGAATTTGGAGGCTATTAA | 1815 | 51.52 | MSQQDYHRAAAAAAGDFFTPFSNHFDRSSHEISKEKLHLRPSLVGLDDNDNDDDEKYNQSVGYDSTGVLSEMFNFPPPPPQTDWYGTREAIDATDSAVAMQLFLMNPNRRSPSPLPAPTSSSTLHMLLPNASSAGCFGEFTWGAVPEQEITGDHNSCNSNPNELGRLSLSLSSSLEAAKAEELRSMGDSGLLYQNPPPHHPQPIYVNMLKTSKYVKAAQELLDEFCSLKINNNNKTKSHTSNSDNGNDGGGVSPPPPPALSTADRIEHQRRKVKLLSMLDEVDQRYNHYCEQMQMVMNSFDVVMGYGAAMQYTALAQKAMSRHFRCLKDTILAQLKLSCEMLGEKDDGRGLGITKGETPRLKFLEKSLRQQRTFHQMGIMEQEAWRPQRGLPERSVNTLRAWLFEHFLNPYPSDADKHLLAKQTGLSRNQVSNWFINARVRLWKPMIEEMYEQEAKQVDHTDEHTPPPSSAAPPPPETTDPPTENDPSAVSKNQPNPNPNQRRYSSSSAVTEAAPPPPTVSHCFPANYCDSNLQDTCRRVGVLAATDQQFGTTSGSASSDISGPTTLMRFGTTAGDVSLTLGLRHAGAPDDRPSFSVMSEFGGY | 604 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43217900 | 43224076 | - | Sed0021190.1 | Sed05g3422 | 716048 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3422 | 604 | Pfam | Associated with HOX | 208 | 331 | IPR006563 | - | |
Sed05g3422 | 604 | Pfam | Homeobox KN domain | 402 | 441 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed05g3422 | 604 | CDD | homeodomain | 385 | 446 | IPR001356 | GO:0003677(InterPro) | |
Sed05g3422 | 604 | SMART | prehox3 | 205 | 333 | IPR006563 | - | |
Sed05g3422 | 604 | MobiDBLite | consensus disorder prediction | 467 | 482 | - | - | |
Sed05g3422 | 604 | MobiDBLite | consensus disorder prediction | 455 | 517 | - | - | |
Sed05g3422 | 604 | Gene3D | - | 388 | 450 | - | - | |
Sed05g3422 | 604 | ProSiteProfiles | 'Homeobox' domain profile. | 382 | 445 | IPR001356 | GO:0003677(InterPro) | |
Sed05g3422 | 604 | MobiDBLite | consensus disorder prediction | 483 | 514 | - | - | |
Sed05g3422 | 604 | FunFam | BEL1-like homeodomain protein 4 | 388 | 450 | - | - | |
Sed05g3422 | 604 | SMART | HOX_1 | 385 | 449 | IPR001356 | GO:0003677(InterPro) | |
Sed05g3422 | 604 | MobiDBLite | consensus disorder prediction | 232 | 264 | - | - | |
Sed05g3422 | 604 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 131 | 484 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed05g3422 | 604 | SUPERFAMILY | Homeodomain-like | 387 | 452 | IPR009057 | - | |
Sed05g3422 | 604 | MobiDBLite | consensus disorder prediction | 232 | 249 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0101 | Sed-Chr1:923905 | Sed05g3422 | Sed-Chr5:43217900 | 1.80E-176 | dispersed | |
Sed01g3859 | Sed-Chr1:67846577 | Sed05g3422 | Sed-Chr5:43217900 | 8.30E-73 | dispersed | |
Sed05g0758 | Sed-Chr5:5931807 | Sed05g3422 | Sed-Chr5:43217900 | 1.20E-70 | dispersed | |
Sed05g3422 | Sed-Chr5:43217900 | Sed10g0422 | Sed-Chr10:2626412 | 6.10E-97 | dispersed | |
Sed05g3422 | Sed-Chr5:43217900 | Sed01g0100 | Sed-Chr1:923905 | 2.30E-173 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38724 | PF07526 | POX | 8.20E-48 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3422 | - | - | - | 0.0 |