Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3422 ATGTCACAACAAGACTATCATAGGGCGGCGGCGGCGGCGGCCGGAGACTTTTTCACACCTTTTTCCAATCACTTCGACAGATCCTCCCACGAGATCAGCAAGGAGAAGCTCCACCTCCGGCCGTCCTTGGTCGGACTTGACGACAACGACAACGACGACGACGAGAAATACAACCAATCGGTTGGCTATGACTCTACCGGAGTCTTATCCGAAATGTTTAATTTTCCTCCACCCCCTCCTCAAACCGACTGGTACGGGACGCGGGAAGCAATCGACGCGACGGACTCAGCAGTGGCCATGCAGCTTTTTTTAATGAACCCTAACCGACGCTCGCCGTCCCCGCTGCCTGCGCCGACATCCTCAAGCACTCTCCACATGCTTCTTCCAAACGCATCCTCAGCTGGGTGTTTTGGAGAATTTACATGGGGAGCGGTTCCAGAGCAAGAAATTACAGGAGATCATAATTCTTGTAATTCAAACCCTAACGAGTTAGGGCGGCTTTCGTTGTCGTTATCGTCGTCGTTAGAAGCTGCAAAAGCGGAGGAATTGAGATCAATGGGTGACAGCGGGTTACTTTATCAAAACCCCCCTCCTCACCATCCTCAACCTATCTATGTCAACATGCTGAAAACCTCAAAATATGTCAAAGCTGCACAAGAACTGTTGGATGAGTTTTGTAGCTTGAAGATTAACAATAATAATAAAACCAAATCTCATACATCAAACTCCGACAACGGCAACGATGGCGGCGGAGTCTCGCCACCGCCACCACCGGCTTTGTCAACAGCTGATAGGATTGAACATCAAAGGAGGAAGGTCAAACTGCTATCCATGCTTGATGAGGTGGATCAAAGATACAACCATTACTGTGAACAGATGCAAATGGTGATGAATTCTTTCGATGTCGTGATGGGGTACGGAGCAGCGATGCAATACACGGCATTGGCACAGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAGGACACCATATTAGCGCAGCTGAAGCTCAGCTGCGAGATGTTGGGGGAGAAAGATGATGGAAGAGGCTTAGGAATAACTAAGGGAGAGACTCCGAGGCTTAAGTTTTTGGAGAAAAGCTTGAGGCAGCAACGGACCTTCCACCAAATGGGCATCATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCGGTCAACACCTTGCGAGCTTGGCTCTTCGAACATTTTCTTAACCCGTACCCTAGTGATGCTGATAAGCATCTGTTGGCTAAGCAGACTGGTTTATCAAGAAATCAGGTATCCAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGATAGAAGAGATGTACGAACAAGAAGCCAAACAAGTTGATCATACAGATGAACACACACCGCCGCCGTCCTCCGCCGCACCGCCACCGCCTGAAACCACTGATCCCCCCACCGAAAACGACCCTTCAGCCGTCTCGAAAAACCAACCAAACCCAAATCCAAATCAACGGCGATATTCCTCCTCCTCCGCCGTAACCGAGGCGGCGCCTCCTCCTCCGACGGTGTCGCACTGCTTTCCGGCCAACTACTGTGACTCAAACCTGCAGGACACGTGTCGGCGTGTCGGCGTTCTCGCTGCAACTGATCAACAATTCGGGACCACAAGCGGCTCTGCCTCGTCTGACATCTCCGGGCCCACTACACTCATGCGGTTTGGGACCACTGCAGGTGACGTGTCGCTCACCCTAGGTTTACGCCACGCCGGAGCTCCCGACGACCGCCCTTCTTTTTCCGTCATGTCCGAATTTGGAGGCTATTAA 1815 51.52 MSQQDYHRAAAAAAGDFFTPFSNHFDRSSHEISKEKLHLRPSLVGLDDNDNDDDEKYNQSVGYDSTGVLSEMFNFPPPPPQTDWYGTREAIDATDSAVAMQLFLMNPNRRSPSPLPAPTSSSTLHMLLPNASSAGCFGEFTWGAVPEQEITGDHNSCNSNPNELGRLSLSLSSSLEAAKAEELRSMGDSGLLYQNPPPHHPQPIYVNMLKTSKYVKAAQELLDEFCSLKINNNNKTKSHTSNSDNGNDGGGVSPPPPPALSTADRIEHQRRKVKLLSMLDEVDQRYNHYCEQMQMVMNSFDVVMGYGAAMQYTALAQKAMSRHFRCLKDTILAQLKLSCEMLGEKDDGRGLGITKGETPRLKFLEKSLRQQRTFHQMGIMEQEAWRPQRGLPERSVNTLRAWLFEHFLNPYPSDADKHLLAKQTGLSRNQVSNWFINARVRLWKPMIEEMYEQEAKQVDHTDEHTPPPSSAAPPPPETTDPPTENDPSAVSKNQPNPNPNQRRYSSSSAVTEAAPPPPTVSHCFPANYCDSNLQDTCRRVGVLAATDQQFGTTSGSASSDISGPTTLMRFGTTAGDVSLTLGLRHAGAPDDRPSFSVMSEFGGY 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43217900 43224076 - Sed0021190.1 Sed05g3422 716048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3422 604 Pfam Associated with HOX 208 331 IPR006563 -
Sed05g3422 604 Pfam Homeobox KN domain 402 441 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g3422 604 CDD homeodomain 385 446 IPR001356 GO:0003677(InterPro)
Sed05g3422 604 SMART prehox3 205 333 IPR006563 -
Sed05g3422 604 MobiDBLite consensus disorder prediction 467 482 - -
Sed05g3422 604 MobiDBLite consensus disorder prediction 455 517 - -
Sed05g3422 604 Gene3D - 388 450 - -
Sed05g3422 604 ProSiteProfiles 'Homeobox' domain profile. 382 445 IPR001356 GO:0003677(InterPro)
Sed05g3422 604 MobiDBLite consensus disorder prediction 483 514 - -
Sed05g3422 604 FunFam BEL1-like homeodomain protein 4 388 450 - -
Sed05g3422 604 SMART HOX_1 385 449 IPR001356 GO:0003677(InterPro)
Sed05g3422 604 MobiDBLite consensus disorder prediction 232 264 - -
Sed05g3422 604 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 131 484 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g3422 604 SUPERFAMILY Homeodomain-like 387 452 IPR009057 -
Sed05g3422 604 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0101 Sed-Chr1:923905 Sed05g3422 Sed-Chr5:43217900 1.80E-176 dispersed
Sed01g3859 Sed-Chr1:67846577 Sed05g3422 Sed-Chr5:43217900 8.30E-73 dispersed
Sed05g0758 Sed-Chr5:5931807 Sed05g3422 Sed-Chr5:43217900 1.20E-70 dispersed
Sed05g3422 Sed-Chr5:43217900 Sed10g0422 Sed-Chr10:2626412 6.10E-97 dispersed
Sed05g3422 Sed-Chr5:43217900 Sed01g0100 Sed-Chr1:923905 2.30E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38724 PF07526 POX 8.20E-48 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3422 - - - 0.0