Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3427 | ATGTCAGGCCAAAGCCAGCGTTTGAATGTGGTTCCAACAGTTACAATGCTCGGAGCAATGAAAGCCCGCCTTGTTGGTGCAACCAGAGGTCATGCTCTCCTAAAGAAGAAGAGTGATGCTCTGACAGTCCAGTTTCGTCAGATACTAAAGAAGATCGTCTCATCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTTCATTTTCTCTCACCGAAGCGAAATACGTTGCTGGTGACAACATCAAGCATATCGTCCTTGAGAATGTCCAAACTGCAGCTATCAAGATTCGATCCCGACAAGAGAATATTGCTGGCGTAAAACTCCCAAAATTTGAACACTATTCCGATGGTGAGACAAAAAATGACCTTACAGGGCTAGCCAGGGGTGGACAGCAGATCCAGCGTTGTCGGGGTGCCTACGTAAAGGCAATTGAGGTTCTTGTCGAGCTTGCATCACTTCAGACATCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTTAATGCTCTAGAGAATGTTGTGAAGCCAAGGCTGGAGAATACTATTAGTTACATTAAGGGAGAATTGGATGAACTGGAAAGGGAAGATTTCTTTAGATTGAAAAAGATACAGGGTTATAAAAGAAGGGAAATTGAGAAACAACGAGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGATATCATTGCAAAAGGGCTTCTCCATAAATTCAGCTCACAATTTACTGTCTGCAGCTGCTGAGAAGGACCAGGATATTATTTTTTGA | 786 | 43.13 | MSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSSKESMGEVMKTSSFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQRCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGFSINSAHNLLSAAAEKDQDIIF | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43234062 | 43237075 | - | Sed0024868.2 | Sed05g3427 | 716053 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3427 | 261 | FunFam | V-type proton ATPase subunit D | 1 | 198 | - | - | |
Sed05g3427 | 261 | NCBIfam | V-type ATP synthase subunit D | 9 | 211 | IPR002699 | GO:0046961(InterPro) | |
Sed05g3427 | 261 | Coils | Coil | 179 | 199 | - | - | |
Sed05g3427 | 261 | PANTHER | V-TYPE ATP SYNTHASE SUBUNIT D | 1 | 261 | IPR002699 | GO:0005774(PANTHER)|GO:0033176(PANTHER)|GO:0046961(InterPro) | |
Sed05g3427 | 261 | Gene3D | - | 1 | 198 | - | - | |
Sed05g3427 | 261 | Pfam | ATP synthase subunit D | 17 | 208 | IPR002699 | GO:0046961(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3426 | Sed-Chr5:43234062 | Sed05g3427 | Sed-Chr5:43234062 | 4.00E-138 | tandem | |
Sed05g3427 | Sed-Chr5:43234062 | Sed05g3428 | Sed-Chr5:43234062 | 4.00E-138 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3427 | K02149 | - | csv:101213101 | 481.485 |