Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3427 ATGTCAGGCCAAAGCCAGCGTTTGAATGTGGTTCCAACAGTTACAATGCTCGGAGCAATGAAAGCCCGCCTTGTTGGTGCAACCAGAGGTCATGCTCTCCTAAAGAAGAAGAGTGATGCTCTGACAGTCCAGTTTCGTCAGATACTAAAGAAGATCGTCTCATCTAAGGAATCAATGGGGGAAGTCATGAAGACATCTTCATTTTCTCTCACCGAAGCGAAATACGTTGCTGGTGACAACATCAAGCATATCGTCCTTGAGAATGTCCAAACTGCAGCTATCAAGATTCGATCCCGACAAGAGAATATTGCTGGCGTAAAACTCCCAAAATTTGAACACTATTCCGATGGTGAGACAAAAAATGACCTTACAGGGCTAGCCAGGGGTGGACAGCAGATCCAGCGTTGTCGGGGTGCCTACGTAAAGGCAATTGAGGTTCTTGTCGAGCTTGCATCACTTCAGACATCATTTTTGACTCTTGATGAGGCAATTAAAACCACAAACCGCAGGGTTAATGCTCTAGAGAATGTTGTGAAGCCAAGGCTGGAGAATACTATTAGTTACATTAAGGGAGAATTGGATGAACTGGAAAGGGAAGATTTCTTTAGATTGAAAAAGATACAGGGTTATAAAAGAAGGGAAATTGAGAAACAACGAGCCAATGCCAAGCTATTTGCTGAGGAACAACTTGCTGAGAAGATATCATTGCAAAAGGGCTTCTCCATAAATTCAGCTCACAATTTACTGTCTGCAGCTGCTGAGAAGGACCAGGATATTATTTTTTGA 786 43.13 MSGQSQRLNVVPTVTMLGAMKARLVGATRGHALLKKKSDALTVQFRQILKKIVSSKESMGEVMKTSSFSLTEAKYVAGDNIKHIVLENVQTAAIKIRSRQENIAGVKLPKFEHYSDGETKNDLTGLARGGQQIQRCRGAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKRREIEKQRANAKLFAEEQLAEKISLQKGFSINSAHNLLSAAAEKDQDIIF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43234062 43237075 - Sed0024868.2 Sed05g3427 716053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3427 261 FunFam V-type proton ATPase subunit D 1 198 - -
Sed05g3427 261 NCBIfam V-type ATP synthase subunit D 9 211 IPR002699 GO:0046961(InterPro)
Sed05g3427 261 Coils Coil 179 199 - -
Sed05g3427 261 PANTHER V-TYPE ATP SYNTHASE SUBUNIT D 1 261 IPR002699 GO:0005774(PANTHER)|GO:0033176(PANTHER)|GO:0046961(InterPro)
Sed05g3427 261 Gene3D - 1 198 - -
Sed05g3427 261 Pfam ATP synthase subunit D 17 208 IPR002699 GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3426 Sed-Chr5:43234062 Sed05g3427 Sed-Chr5:43234062 4.00E-138 tandem
Sed05g3427 Sed-Chr5:43234062 Sed05g3428 Sed-Chr5:43234062 4.00E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3427 K02149 - csv:101213101 481.485