Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3431 ATGGGAGGAAGAAGCTTTATGGCAGTTTTTGTTATTGCTTTGACATCATTCCTGGTGGTTGTTCCGACGTCGGAGGCACAGCTTCGGCGAGATTTCTATGCCAACGTCTGCCCTAACGTCGAGAGCATTGTCCGAACAGCCGTGACGAAGAAGTTTCGGCAAACTTTCGTCACCGTTCCTGCCACGCTCCGTCTCTTCTTTCACGACTGTTTTGTTCAGGGATGTGATGCGTCGGTAATGATCGCTTCGACGGGAGGTAACACTGCGGAGAAAGATCATGCTGATAATCTTTCATTGGCTGGTGATGGATTTGATACCGTGATCAAAGCCAAAGCCGCAGTTGATGCAGTGCCAGGATGTAGAAATAAAGTATCTTGTGCAGATATTCTTGTGATGGCTACACGAGATGTCATTTCATTGGCAAGAGGACCTTCCTATGCAGTGGAGCTGGGAAGAAAAGATGGGCTTGTTTCAAGAGCTTCAGATGTTGAAGGAAAATTGCCCAAACCAACATTTAATCTCAATCAGCTTAATGCTATGTTTGCTGCCAATGGACTTTCACAGACTGACATGATTGCTCTTTCTGCTGCCCACACGGTTGGATTCTCCCACTGCAACAAGTTCGCAAACAGAATCTACAATTTCAGCCGTACAAATCCAGTAGATCCTACGTTGGATCCGACATACGCAGCCAAGCTTCAAGGAATGTGCCCAAGAGTTGTGGATCCAAGGATAGCCATAGACATGGACCCAAACACCGCCCAAAGATTCGACAACGTGTACTTCAAGAATCTGCAGGCTGGAATGGGCCTTTTCACTTCGGATCAGGCCCTCTTTACCGACCCGAGATCCAGGCCCACTGTCAATGCTTGGGCCCATAGTGGCCAGACCTTCTACACGGCCTTCATCAACGCCATGACCAAGTTGGGTCGGGTCGGAGTTAAGACAGGATCCAATGGGAACATCCGTACGGACTGTGGCGTTTTCAACGCTTAA 996 48.49 MGGRSFMAVFVIALTSFLVVVPTSEAQLRRDFYANVCPNVESIVRTAVTKKFRQTFVTVPATLRLFFHDCFVQGCDASVMIASTGGNTAEKDHADNLSLAGDGFDTVIKAKAAVDAVPGCRNKVSCADILVMATRDVISLARGPSYAVELGRKDGLVSRASDVEGKLPKPTFNLNQLNAMFAANGLSQTDMIALSAAHTVGFSHCNKFANRIYNFSRTNPVDPTLDPTYAAKLQGMCPRVVDPRIAIDMDPNTAQRFDNVYFKNLQAGMGLFTSDQALFTDPRSRPTVNAWAHSGQTFYTAFINAMTKLGRVGVKTGSNGNIRTDCGVFNA 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43258200 43260239 - Sed0009370.1 Sed05g3431 716057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3431 331 ProSiteProfiles Plant heme peroxidase family profile. 27 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PANTHER - 11 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 Gene3D Peroxidase, domain 2 168 309 - -
Sed05g3431 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Sed05g3431 331 SUPERFAMILY Heme-dependent peroxidases 27 330 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Sed05g3431 331 Pfam Peroxidase 44 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 FunFam Peroxidase 168 309 - -
Sed05g3431 331 Gene3D - 31 330 - -
Sed05g3431 331 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3431 331 FunFam Peroxidase 31 179 - -
Sed05g3431 331 CDD secretory_peroxidase 27 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3431 Sed-Chr5:43258200 Sed14g0905 Sed-Chr14:17988303 9.90E-142 dispersed
Sed11g2264 Sed-Chr11:35900894 Sed05g3431 Sed-Chr5:43258200 8.10E-112 transposed
Sed01g0125 Sed-Chr1:1117013 Sed05g3431 Sed-Chr5:43258200 3.10E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3431 K00430 - csv:101208254 581.637