Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3439 ATGGGGTCATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCTTCTTCTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAGTAGAAGGGGTCTTCAAACTATTGAAGCCAATACTGGATGCAGTTTTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTAAGGCATTTGAAGAACTTGGTCAGTCAGTTGATGAACTGAGGGTGCTCTTTGAAAATTGGCAGCCATTGTCGAGTAGAGTATACTTTGTACTGCAAAGTGAAGCATTAATAACAAAGATTGGAAAATCTAGCGAGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAAACTTCCGGAGGAATTAAGTTCAACAGCTCTTGAGCACTGTGTACGAAAAATTGAGCATATTGGAAAGGAAGAAATATCTTCTGTTATTAAAGATGCTTTAAGGAATCAAGTAGAGGGCATTGCACCAAGCTCAGATGTCTTGATCAAGCTTGCGGATTCCCTGAGTTTGAGATCAAATCAGGAGATATTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCAGAGCAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGGTTTCTCTTGTAACCCGTATGCATGAACGGCTTGTTATGATAAAGCAATCCCAAACTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACCGATCCAGTTATTGTAGCATCAGGGCAGACTTATGAGCGGGTCTTTATTAAAAAATGGATTGATTTGGGACTTAATGTTTGCCCAAAGACTCGACAGACATTGGTTCACACAAATCTTATACCTAATTACACCGTTAAGGCTCTGATTGCAAACTGGTGCGAGACAAATAATGTGAAATTATCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCACCCCATCTTGTTGGGAGTTTCGAGTCTGATACCCATCGAGAACCCCTTTTTCCGCCCTCCCCTGGCTACCAACCGATGTCCCCTCAGTCAACCAGGTCTGCACTTGGTGGAACCCAGCGAGATGGAGGTTCTTCTTTACTCTCCCACTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAACAGAGATTGATGTTAGTAGACTGCTGCATACAAGTTCGGAAGATCGAATGTCTAAATTAGAAGAAAATGGTTATGATTTGGTTGGTAAACCATCAATGTCACCATCTAGAACCAATGTTCCAAATACCAGTGAGGTTGAACCGTCACATAGTCATAATAGGACGGCCTCAACCTCTAGTGCAGTTTCAAATGCTAATCTATCTCGAGGAACTTCTGGGGAAGCCAATGAATCTCCAAATGTGTCAACCAATCTGGCAGGTTATAGGAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCAACTCCAAACCACAGAGAACCAGAGATTCCACCCAGACTAGCTGACTCACGATCTCGGGGTAATTCGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAATGGCATCATCTGCTAATGAGACGAGGCCAGATCTTTCTGCTATTGAAGCTCAAGTTCAGAAGGTGGTTGAGGAATTGAAAAGCACTTCACTAGAAACTTTAAAAAGTGCTACAGCTGAATTGCGGCTACTAGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAAGGTGGGGCCATTCAATATTTGGTTGATTTGCTCCGCTCTGCAGACTCGAAGATCCAGGAGAATGCGGTGACTGCACTTCTAAACCTATCCATCAATGATAATAACAAAAGTGCCATTGCCCAGGCATATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAGGCAAAGGAGAATTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAAAACAAGGTCAAAATAGGGAGATCTGGAGCAATAGAACCTCTGGTTGAATTGTTGGGTAATGGAACTCCAAGGGGAAAGAAGGATGCTGCTACAGCTTTGTTTAATTTGTCAATATTTCATGAGAACAAGGCTAGAATTGTACAGGCTGGAGCTGTGAGGCATCTTGTAGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCCGTGTTGGCAAATCTTGCCACGATTCCCGAGGGTAGGTCTGCAATTGGTCAGGAAGGTGGAATTCCCGTTCTGGTCGAGGTTGTCGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCAGCAGCAGCGTTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCCCAAGCTCTTCTAAGCCATTTCAGAAGCCAGAGACATGGGAATTCAGGAAGAGGCTAA 2490 43.37 MGSSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKVEGVFKLLKPILDAVFDSDIASDEELTKAFEELGQSVDELRVLFENWQPLSSRVYFVLQSEALITKIGKSSEDIFQLLQSSNEKLPEELSSTALEHCVRKIEHIGKEEISSVIKDALRNQVEGIAPSSDVLIKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMVSLVTRMHERLVMIKQSQTSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKKWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSKSVNLNQLSPHLVGSFESDTHREPLFPPSPGYQPMSPQSTRSALGGTQRDGGSSLLSHSFSEDSLSNDAGDETEIDVSRLLHTSSEDRMSKLEENGYDLVGKPSMSPSRTNVPNTSEVEPSHSHNRTASTSSAVSNANLSRGTSGEANESPNVSTNLAGYRSDAAGESKSEPLAAATSTPNHREPEIPPRLADSRSRGNSMWLRPSERFATRIMASSANETRPDLSAIEAQVQKVVEELKSTSLETLKSATAELRLLAKHNMDNRIVIAQGGAIQYLVDLLRSADSKIQENAVTALLNLSINDNNKSAIAQAYAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIEPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43311464 43325147 + Sed0028090.1 Sed05g3439 716065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3439 829 Pfam Armadillo/beta-catenin-like repeat 659 696 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 Pfam Armadillo/beta-catenin-like repeat 577 614 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Sed05g3439 829 Coils Coil 179 209 - -
Sed05g3439 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 668 710 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 MobiDBLite consensus disorder prediction 330 386 - -
Sed05g3439 829 MobiDBLite consensus disorder prediction 349 380 - -
Sed05g3439 829 PANTHER U BOX DOMAIN-CONTAINING 29 822 - -
Sed05g3439 829 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Sed05g3439 829 CDD RING-Ubox_PUB 237 289 IPR045210 -
Sed05g3439 829 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3439 829 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3439 829 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3439 829 MobiDBLite consensus disorder prediction 418 475 - -
Sed05g3439 829 Coils Coil 539 559 - -
Sed05g3439 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 709 750 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 FunFam RING-type E3 ubiquitin transferase 529 824 - -
Sed05g3439 829 MobiDBLite consensus disorder prediction 409 513 - -
Sed05g3439 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 628 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SUPERFAMILY ARM repeat 545 818 IPR016024 -
Sed05g3439 829 SMART arm_5 780 820 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SMART arm_5 657 697 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SMART arm_5 738 778 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SMART arm_5 698 737 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SMART arm_5 575 615 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
Sed05g3439 829 SUPERFAMILY RING/U-box 225 312 - -
Sed05g3439 829 Gene3D - 524 825 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3439 Sed-Chr5:43311464 Sed07g0493 Sed-Chr7:3767309 7.20E-72 dispersed
Sed12g1903 Sed-Chr12:30199477 Sed05g3439 Sed-Chr5:43311464 2.10E-11 dispersed
Sed12g1904 Sed-Chr12:30199477 Sed05g3439 Sed-Chr5:43311464 2.10E-11 dispersed
Sed05g3439 Sed-Chr5:43311464 Sed05g3440 Sed-Chr5:43316479 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3439 - - - 0.0