Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3440 ATGTATTTTTGTGATTTAGCCATTACTCCCCGACTCCCGTCCATCCTCCCATTATATGTACATTCCCTTTCTTTCATCTTGATTGAGTATGATATTGACGCAGGTGCAATGGGGTCATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCTTCTTCTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAGTAGAAGGGGTCTTCAAACTATTGAAGCCAATACTGGATGCAGTTTTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTAAGGCATTTGAAGAACTTGGTCAGTCAGTTGATGAACTGAGGGTGCTCTTTGAAAATTGGCAGCCATTGTCGAGTAGAGTATACTTTGTACTGCAAAGTGAAGCATTAATAACAAAGATTGGAAAATCTAGCGAGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAAACTTCCGGAGGAATTAAGTTCAACAGCTCTTGAGCACTGTGTACGAAAAATTGAGCATATTGGAAAGGAAGAAATATCTTCTGTTATTAAAGATGCTTTAAGGAATCAAGTAGAGGGCATTGCACCAAGCTCAGATGTCTTGATCAAGCTTGCGGATTCCCTGAGTTTGAGATCAAATCAGGAGATATTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCAGAGCAAGCTGAAAATACTGGAGAAGCTGAGGACATTGATCAAATGGTTTCTCTTGTAACCCGTATGCATGAACGGCTTGTTATGATAAAGCAATCCCAAACTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTTTCTCTCGAACTAATGACCGATCCAGTTATTGTAGCATCAGGGCAGACTTATGAGCGGGTCTTTATTAAAAAATGGATTGATTTGGGACTTAATGTTTGCCCAAAGACTCGACAGACATTGGTTCACACAAATCTTATACCTAATTACACCGTTAAGGCTCTGATTGCAAACTGGTGCGAGACAAATAATGTGAAATTATCTGATCCCTCAAAGTCAGTGAACTTAAACCAGCTTTCACCCCATCTTGTTGGGAGTTTCGAGTCTGATACCCATCGAGAACCCCTTTTTCCGCCCTCCCCTGGCTACCAACCGATGTCCCCTCAGTCAACCAGGTCTGCACTTGGTGGAACCCAGCGAGATGGAGGTTCTTCTTTACTCTCCCACTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAACAGAGATTGATGTTAGTAGACTGCTGCATACAAGTTCGGAAGATCGAATGTCTAAATTAGAAGAAAATGGTTATGATTTGGTTGGTAAACCATCAATGTCACCATCTAGAACCAATGTTCCAAATACCAGTGAGGTTGAACCGTCACATAGTCATAATAGGACGGCCTCAACCTCTAGTGCAGTTTCAAATGCTAATCTATCTCGAGGAACTTCTGGGGAAGCCAATGAATCTCCAAATGTGTCAACCAATCTGGCAGGTTATAGGAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCAACTCCAAACCACAGAGAACCAGAGATTCCACCCAGACTAGCTGACTCACGATCTCGGGGTAATTCGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAATGGCATCATCTGCTAATGAGACGAGGCCAGATCTTTCTGCTATTGAAGCTCAAGTTCAGAAGGTGGTTGAGGAATTGAAAAGCACTTCACTAGAAACTTTAAAAAGTGCTACAGCTGAATTGCGGCTACTAGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAAGGTGGGGCCATTCAATATTTGGTTGATTTGCTCCGCTCTGCAGACTCGAAGATCCAGGAGAATGCGGTGACTGCACTTCTAAACCTATCCATCAATGATAATAACAAAAGTGCCATTGCCCAGGCATATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAGGCAAAGGAGAATTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAAAACAAGGTCAAAATAGGGAGATCTGGAGCAATAGAACCTCTGGTTGAATTGTTGGGTAATGGAACTCCAAGGGGAAAGAAGGATGCTGCTACAGCTTTGTTTAATTTGTCAATATTTCATGAGAACAAGGCTAGAATTGTACAGGCTGGAGCTGTGAGGCATCTTGTAGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCCGTGTTGGCAAATCTTGCCACGATTCCCGAGGGTAGGTCTGCAATTGGTCAGGAAGGTGGAATTCCCGTTCTGGTCGAGGTTGTCGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCAGCAGCAGCGTTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAAAAGGCCCAAGCTCTTCTAAGCCATTTCAGAAGCCAGAGACATGGGAATTCAGGAAGAGGCTAA 2598 43.26 MYFCDLAITPRLPSILPLYVHSLSFILIEYDIDAGAMGSSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKVEGVFKLLKPILDAVFDSDIASDEELTKAFEELGQSVDELRVLFENWQPLSSRVYFVLQSEALITKIGKSSEDIFQLLQSSNEKLPEELSSTALEHCVRKIEHIGKEEISSVIKDALRNQVEGIAPSSDVLIKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMVSLVTRMHERLVMIKQSQTSSPVSIPADFCCPLSLELMTDPVIVASGQTYERVFIKKWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSKSVNLNQLSPHLVGSFESDTHREPLFPPSPGYQPMSPQSTRSALGGTQRDGGSSLLSHSFSEDSLSNDAGDETEIDVSRLLHTSSEDRMSKLEENGYDLVGKPSMSPSRTNVPNTSEVEPSHSHNRTASTSSAVSNANLSRGTSGEANESPNVSTNLAGYRSDAAGESKSEPLAAATSTPNHREPEIPPRLADSRSRGNSMWLRPSERFATRIMASSANETRPDLSAIEAQVQKVVEELKSTSLETLKSATAELRLLAKHNMDNRIVIAQGGAIQYLVDLLRSADSKIQENAVTALLNLSINDNNKSAIAQAYAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIEPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43316479 43325147 + Sed0028090.2 Sed05g3440 716066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3440 865 Coils Coil 215 245 - -
Sed05g3440 865 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 622 664 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 MobiDBLite consensus disorder prediction 385 416 - -
Sed05g3440 865 MobiDBLite consensus disorder prediction 366 422 - -
Sed05g3440 865 FunFam RING-type E3 ubiquitin transferase 565 860 - -
Sed05g3440 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Sed05g3440 865 SMART arm_5 693 733 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 SMART arm_5 816 856 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 SMART arm_5 652 692 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 SMART arm_5 611 651 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 SMART arm_5 774 814 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 SMART arm_5 734 773 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 PANTHER U BOX DOMAIN-CONTAINING 65 858 - -
Sed05g3440 865 FunFam RING-type E3 ubiquitin transferase 271 346 - -
Sed05g3440 865 CDD RING-Ubox_PUB 273 325 IPR045210 -
Sed05g3440 865 SMART Ubox_2 275 338 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3440 865 MobiDBLite consensus disorder prediction 454 511 - -
Sed05g3440 865 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 745 786 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 Coils Coil 575 595 - -
Sed05g3440 865 SUPERFAMILY ARM repeat 581 854 IPR016024 -
Sed05g3440 865 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 704 746 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 Pfam Armadillo/beta-catenin-like repeat 613 650 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 Pfam Armadillo/beta-catenin-like repeat 695 732 IPR000225 GO:0005515(InterPro)
Sed05g3440 865 Gene3D - 560 861 IPR011989 -
Sed05g3440 865 MobiDBLite consensus disorder prediction 445 549 - -
Sed05g3440 865 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3440 865 Pfam U-box domain 272 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed05g3440 865 SUPERFAMILY RING/U-box 261 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3440 Sed-Chr5:43316479 Sed07g0493 Sed-Chr7:3767309 2.00E-72 dispersed
Sed05g3439 Sed-Chr5:43311464 Sed05g3440 Sed-Chr5:43316479 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3440 - - - 0.0