Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3458 ATGGAAACCAATGAAAATGATCTTAAAGTGCCTCTAAATCCACGTGACCTCAATTACGAAGACAGAGAGTTAGATTTAATAGAAGCCGGAGGACTAGCCGCCGACGAGTTTCCCGAGCAGTGCATTGCAATATGCCGTCTAAGAATCAGAACCATGTCCTTCTCAGGCAAAGCCCAATGCCTTCAAAACGCCGCCGCCATGGTCGACGGCGTCCAACGCCCATTCATCGGTCCCGGAATCGAAGAAGCCAAAGTCCTCTTTGATCCAAATCTGACCACCGAAGCCCAAATCCTCGTCGCCGTCAAGGATTCCGGTTTCGACGCCGAACTCAACTCCGCCGCCGGCGAATCTCACAAAGTCCGCATAAAACTGGACCGAGCCGGGCCAGCCGACGCCGCCGCCATTCGATCCTCTCTCGAGCAGGCTTGTGGAGTGAAATCTGTGGATCTGGACGGGAAAGGGCAGATGGTTCTGATCGGGTATGATCCGGACCGGACCGGTCCGCGGTTTCTGTTGCAGTGCCTTGAGAGCTATTCGGCGAGCTTGTATGTGGCTCCGAAGAGGCGAGATGTGGAGCAGATGCAAGAAGCTTGTACTTATTGGAAGCTGTTCTTGCTGAGCTGCTTGTTCTGTGTTCCTGTGGTGGCTTTTGCTATGGTGCTTCCTACGATTCCTCCGTATGGGGAGTGGTTGAATTCTAGGGTTTACCATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACGCCAGTCCAGTTCATTGCTGGCTGGAGATTTTATGTAGGATCATACCGTGCATTACAAAAGAAATCTGCAGATATGGATGTTTTGGTTGCTGCAGGCACCAATGCAGCGTACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAAAGGGAAAGATTTTTTTGAGTTTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTGATCGCCAAAGGGAAGTCATCAGATGCTTTAGGAGAGCTTGCTCACCTTGCTCCTCGTACAGCTTGTTTGATGACCTTCGATAATATTGGAAATTTGCTATCGGAGTCGGAGATTGATGCCCAGCTGATACAAAGGAATGATATAGTTAAGATTGATCCTGGGGAAAAGGTTCCTGTTGATGGGATTGTTATTAGTGGTGAAAGCAAGGTGAATGAGAGTACAATTACTGGAGAAGCAAGATCCATGGCCAAAGCACCCGGTTCCAAGGTTATTGGCGGGACTGTGAATGAAAATGGATGCTTAATAGTTAAGACCACTCATGTTGGATCCGATTCTACACTTTCTCGAATTGTACAACTTGTGGAATCAGCTCAGCTATGGCGAGCACCAGCTCAAATATTTGCAGATCGGATATCAAAGTATTTTGTTCCTCTTGTTGTTGTGACAGCATTTTTGACATGGCTTGGGTGGTTTATTTCTGGAAACATCGGCTTGTACCCTAAGCATTGGATACCAGAAGGCATGGATGAGTTTGAACTTGCTCTGCAGTTTGGCATTTCAGTGGTAGTGATCGCATGCCCATGTGCCCTTGGTTTAGCAACGACAACTGCAATCATGGTTGCGTCCGGGAAGGGTGCTTCTCTAGGTGTGCTCATCAAGGGAGCAAGTGCACTTCAAAATGCGTACAAGGTGAAAACAGTAGTTTTTGACAAGAGTGGAACTCTAACACTTGGCAAGCCAGAGGTAGTCAGCGTTGTGCTTTTTTCTACATTCTCAATGCATGAGGTCTGTGATATAGCAATTACAATCGAGTCATACAGTGAACACCCTTTAGCAAAATCTATAGTGGCGTATGCAAAGAAAATGAAACTAAAGTTTGGGGCTGGAGCCGAATCTTACAAATGCATCCAGAACTTTGAGGTGTTCCCAGGACAAGGGGTTGGAGGAATAATTGATGCAATGTCAGTTTTAGTAGGAAACTTAAGGCTCATGCAATCTCACAGCATTGTTGTTGGCCCTCATGTTGATCGTTATGTTATAGAAAATGAGCGGCTGGCTCAAACATGCATCTTAGTGGCTATTAATGGCCAGATAGCAGGAGGTTTTGGTGTTGTAGATGCGCCAAAGCCTGGGGCTAAAGCTGTTATATCATATCTTCGCTCAATCGGCATCTCAAGCATAATGCTCACTGGCGATAACTGGGCCACCGCATTTGCTGTTGCAAAAGGAATTGGGATCAATGAAGTCCATGCAGAGATCAATCCAGTTCTGAAAGCTGACACCATCAAATCCTTGAAGACAACAGGTAAAATGGTGGCAGTGGTGGGAGATGACTCACATGCCTTGGCCGCAGCGGATGTTGGCATTGCCATTGGTGTTGGAATAAACATTGCCATAGAAGCAGCTGACATTGTTCTCATGCGAAGCAATTTAGAAGATGTAGTTACAGCCATAGACCTCTCAAGACAAACTGTTTATCGAATATGGCTTAACTACATCTGGGCTCTTGGCTATAATATCATCAGTATGCCTATTGCTGCCGGAATCTTATATCCCTTTGCAGGAATCCGATTGCCACCGTGGCTCGCCGGTGCCTGCATGGCTGCTTCTTCCCTTAGTGTTGTATGTTCTTCTCTCTTATTGAAATTCTATAGGAGACCCTTGAATTTTCAATCCACTTAG 2667 45.97 METNENDLKVPLNPRDLNYEDRELDLIEAGGLAADEFPEQCIAICRLRIRTMSFSGKAQCLQNAAAMVDGVQRPFIGPGIEEAKVLFDPNLTTEAQILVAVKDSGFDAELNSAAGESHKVRIKLDRAGPADAAAIRSSLEQACGVKSVDLDGKGQMVLIGYDPDRTGPRFLLQCLESYSASLYVAPKRRDVEQMQEACTYWKLFLLSCLFCVPVVAFAMVLPTIPPYGEWLNSRVYHMLTVGMVLKWIFCTPVQFIAGWRFYVGSYRALQKKSADMDVLVAAGTNAAYFYSVYIVFKASTSNSFKGKDFFEFSSMLISFILLGKYLEVIAKGKSSDALGELAHLAPRTACLMTFDNIGNLLSESEIDAQLIQRNDIVKIDPGEKVPVDGIVISGESKVNESTITGEARSMAKAPGSKVIGGTVNENGCLIVKTTHVGSDSTLSRIVQLVESAQLWRAPAQIFADRISKYFVPLVVVTAFLTWLGWFISGNIGLYPKHWIPEGMDEFELALQFGISVVVIACPCALGLATTTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKSGTLTLGKPEVVSVVLFSTFSMHEVCDIAITIESYSEHPLAKSIVAYAKKMKLKFGAGAESYKCIQNFEVFPGQGVGGIIDAMSVLVGNLRLMQSHSIVVGPHVDRYVIENERLAQTCILVAINGQIAGGFGVVDAPKPGAKAVISYLRSIGISSIMLTGDNWATAFAVAKGIGINEVHAEINPVLKADTIKSLKTTGKMVAVVGDDSHALAAADVGIAIGVGINIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIISMPIAAGILYPFAGIRLPPWLAGACMAASSLSVVCSSLLLKFYRRPLNFQST 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43433441 43440882 - Sed0008267.1 Sed05g3458 716084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3458 888 PRINTS Copper-transporting ATPase signature 840 854 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase signature 333 351 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase signature 261 280 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase signature 472 486 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase signature 747 764 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase signature 313 332 - -
Sed05g3458 888 SUPERFAMILY HAD-like 561 873 IPR036412 -
Sed05g3458 888 Gene3D - 570 647 IPR023299 GO:0000166(InterPro)
Sed05g3458 888 CDD P-type_ATPase_Cu-like 204 863 - -
Sed05g3458 888 PRINTS P-type cation-transporting ATPase superfamily signature 790 802 - -
Sed05g3458 888 PRINTS P-type cation-transporting ATPase superfamily signature 563 577 - -
Sed05g3458 888 PRINTS P-type cation-transporting ATPase superfamily signature 695 706 - -
Sed05g3458 888 PRINTS P-type cation-transporting ATPase superfamily signature 399 413 - -
Sed05g3458 888 PRINTS P-type cation-transporting ATPase superfamily signature 717 727 - -
Sed05g3458 888 PRINTS P-type cation-transporting ATPase superfamily signature 767 786 - -
Sed05g3458 888 Gene3D - 648 701 IPR023299 GO:0000166(InterPro)
Sed05g3458 888 Gene3D - 529 823 IPR023214 -
Sed05g3458 888 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 32 884 - -
Sed05g3458 888 Gene3D - 331 453 - -
Sed05g3458 888 SUPERFAMILY Calcium ATPase, transduction domain A 364 449 IPR008250 -
Sed05g3458 888 Pfam E1-E2 ATPase 363 541 - -
Sed05g3458 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 315 837 IPR023298 -
Sed05g3458 888 FunFam Copper-transporting ATPase 1, putative 331 453 - -
Sed05g3458 888 NCBIfam HAD-IC family P-type ATPase 316 844 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g3458 888 PRINTS Copper-transporting ATPase 1 signature 99 119 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase 1 signature 239 259 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase 1 signature 204 225 - -
Sed05g3458 888 PRINTS Copper-transporting ATPase 1 signature 259 284 - -
Sed05g3458 888 SUPERFAMILY HMA, heavy metal-associated domain 44 111 IPR036163 GO:0046872(InterPro)
Sed05g3458 888 Pfam haloacid dehalogenase-like hydrolase 559 774 - -
Sed05g3458 888 NCBIfam heavy metal translocating P-type ATPase 276 876 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3458 Sed-Chr5:43433441 Sed14g0722 Sed-Chr14:7434904 5.60E-232 dispersed
Sed05g3458 Sed-Chr5:43433441 Sed14g1639 Sed-Chr14:24568967 4.60E-186 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3458 K17686 - csv:101214276 1298.88