Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3458 | ATGGAAACCAATGAAAATGATCTTAAAGTGCCTCTAAATCCACGTGACCTCAATTACGAAGACAGAGAGTTAGATTTAATAGAAGCCGGAGGACTAGCCGCCGACGAGTTTCCCGAGCAGTGCATTGCAATATGCCGTCTAAGAATCAGAACCATGTCCTTCTCAGGCAAAGCCCAATGCCTTCAAAACGCCGCCGCCATGGTCGACGGCGTCCAACGCCCATTCATCGGTCCCGGAATCGAAGAAGCCAAAGTCCTCTTTGATCCAAATCTGACCACCGAAGCCCAAATCCTCGTCGCCGTCAAGGATTCCGGTTTCGACGCCGAACTCAACTCCGCCGCCGGCGAATCTCACAAAGTCCGCATAAAACTGGACCGAGCCGGGCCAGCCGACGCCGCCGCCATTCGATCCTCTCTCGAGCAGGCTTGTGGAGTGAAATCTGTGGATCTGGACGGGAAAGGGCAGATGGTTCTGATCGGGTATGATCCGGACCGGACCGGTCCGCGGTTTCTGTTGCAGTGCCTTGAGAGCTATTCGGCGAGCTTGTATGTGGCTCCGAAGAGGCGAGATGTGGAGCAGATGCAAGAAGCTTGTACTTATTGGAAGCTGTTCTTGCTGAGCTGCTTGTTCTGTGTTCCTGTGGTGGCTTTTGCTATGGTGCTTCCTACGATTCCTCCGTATGGGGAGTGGTTGAATTCTAGGGTTTACCATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACGCCAGTCCAGTTCATTGCTGGCTGGAGATTTTATGTAGGATCATACCGTGCATTACAAAAGAAATCTGCAGATATGGATGTTTTGGTTGCTGCAGGCACCAATGCAGCGTACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAAAGGGAAAGATTTTTTTGAGTTTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTGATCGCCAAAGGGAAGTCATCAGATGCTTTAGGAGAGCTTGCTCACCTTGCTCCTCGTACAGCTTGTTTGATGACCTTCGATAATATTGGAAATTTGCTATCGGAGTCGGAGATTGATGCCCAGCTGATACAAAGGAATGATATAGTTAAGATTGATCCTGGGGAAAAGGTTCCTGTTGATGGGATTGTTATTAGTGGTGAAAGCAAGGTGAATGAGAGTACAATTACTGGAGAAGCAAGATCCATGGCCAAAGCACCCGGTTCCAAGGTTATTGGCGGGACTGTGAATGAAAATGGATGCTTAATAGTTAAGACCACTCATGTTGGATCCGATTCTACACTTTCTCGAATTGTACAACTTGTGGAATCAGCTCAGCTATGGCGAGCACCAGCTCAAATATTTGCAGATCGGATATCAAAGTATTTTGTTCCTCTTGTTGTTGTGACAGCATTTTTGACATGGCTTGGGTGGTTTATTTCTGGAAACATCGGCTTGTACCCTAAGCATTGGATACCAGAAGGCATGGATGAGTTTGAACTTGCTCTGCAGTTTGGCATTTCAGTGGTAGTGATCGCATGCCCATGTGCCCTTGGTTTAGCAACGACAACTGCAATCATGGTTGCGTCCGGGAAGGGTGCTTCTCTAGGTGTGCTCATCAAGGGAGCAAGTGCACTTCAAAATGCGTACAAGGTGAAAACAGTAGTTTTTGACAAGAGTGGAACTCTAACACTTGGCAAGCCAGAGGTAGTCAGCGTTGTGCTTTTTTCTACATTCTCAATGCATGAGGTCTGTGATATAGCAATTACAATCGAGTCATACAGTGAACACCCTTTAGCAAAATCTATAGTGGCGTATGCAAAGAAAATGAAACTAAAGTTTGGGGCTGGAGCCGAATCTTACAAATGCATCCAGAACTTTGAGGTGTTCCCAGGACAAGGGGTTGGAGGAATAATTGATGCAATGTCAGTTTTAGTAGGAAACTTAAGGCTCATGCAATCTCACAGCATTGTTGTTGGCCCTCATGTTGATCGTTATGTTATAGAAAATGAGCGGCTGGCTCAAACATGCATCTTAGTGGCTATTAATGGCCAGATAGCAGGAGGTTTTGGTGTTGTAGATGCGCCAAAGCCTGGGGCTAAAGCTGTTATATCATATCTTCGCTCAATCGGCATCTCAAGCATAATGCTCACTGGCGATAACTGGGCCACCGCATTTGCTGTTGCAAAAGGAATTGGGATCAATGAAGTCCATGCAGAGATCAATCCAGTTCTGAAAGCTGACACCATCAAATCCTTGAAGACAACAGGTAAAATGGTGGCAGTGGTGGGAGATGACTCACATGCCTTGGCCGCAGCGGATGTTGGCATTGCCATTGGTGTTGGAATAAACATTGCCATAGAAGCAGCTGACATTGTTCTCATGCGAAGCAATTTAGAAGATGTAGTTACAGCCATAGACCTCTCAAGACAAACTGTTTATCGAATATGGCTTAACTACATCTGGGCTCTTGGCTATAATATCATCAGTATGCCTATTGCTGCCGGAATCTTATATCCCTTTGCAGGAATCCGATTGCCACCGTGGCTCGCCGGTGCCTGCATGGCTGCTTCTTCCCTTAGTGTTGTATGTTCTTCTCTCTTATTGAAATTCTATAGGAGACCCTTGAATTTTCAATCCACTTAG | 2667 | 45.97 | METNENDLKVPLNPRDLNYEDRELDLIEAGGLAADEFPEQCIAICRLRIRTMSFSGKAQCLQNAAAMVDGVQRPFIGPGIEEAKVLFDPNLTTEAQILVAVKDSGFDAELNSAAGESHKVRIKLDRAGPADAAAIRSSLEQACGVKSVDLDGKGQMVLIGYDPDRTGPRFLLQCLESYSASLYVAPKRRDVEQMQEACTYWKLFLLSCLFCVPVVAFAMVLPTIPPYGEWLNSRVYHMLTVGMVLKWIFCTPVQFIAGWRFYVGSYRALQKKSADMDVLVAAGTNAAYFYSVYIVFKASTSNSFKGKDFFEFSSMLISFILLGKYLEVIAKGKSSDALGELAHLAPRTACLMTFDNIGNLLSESEIDAQLIQRNDIVKIDPGEKVPVDGIVISGESKVNESTITGEARSMAKAPGSKVIGGTVNENGCLIVKTTHVGSDSTLSRIVQLVESAQLWRAPAQIFADRISKYFVPLVVVTAFLTWLGWFISGNIGLYPKHWIPEGMDEFELALQFGISVVVIACPCALGLATTTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKSGTLTLGKPEVVSVVLFSTFSMHEVCDIAITIESYSEHPLAKSIVAYAKKMKLKFGAGAESYKCIQNFEVFPGQGVGGIIDAMSVLVGNLRLMQSHSIVVGPHVDRYVIENERLAQTCILVAINGQIAGGFGVVDAPKPGAKAVISYLRSIGISSIMLTGDNWATAFAVAKGIGINEVHAEINPVLKADTIKSLKTTGKMVAVVGDDSHALAAADVGIAIGVGINIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIISMPIAAGILYPFAGIRLPPWLAGACMAASSLSVVCSSLLLKFYRRPLNFQST | 888 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43433441 | 43440882 | - | Sed0008267.1 | Sed05g3458 | 716084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase signature | 840 | 854 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase signature | 333 | 351 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase signature | 261 | 280 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase signature | 472 | 486 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase signature | 747 | 764 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase signature | 313 | 332 | - | - | |
Sed05g3458 | 888 | SUPERFAMILY | HAD-like | 561 | 873 | IPR036412 | - | |
Sed05g3458 | 888 | Gene3D | - | 570 | 647 | IPR023299 | GO:0000166(InterPro) | |
Sed05g3458 | 888 | CDD | P-type_ATPase_Cu-like | 204 | 863 | - | - | |
Sed05g3458 | 888 | PRINTS | P-type cation-transporting ATPase superfamily signature | 790 | 802 | - | - | |
Sed05g3458 | 888 | PRINTS | P-type cation-transporting ATPase superfamily signature | 563 | 577 | - | - | |
Sed05g3458 | 888 | PRINTS | P-type cation-transporting ATPase superfamily signature | 695 | 706 | - | - | |
Sed05g3458 | 888 | PRINTS | P-type cation-transporting ATPase superfamily signature | 399 | 413 | - | - | |
Sed05g3458 | 888 | PRINTS | P-type cation-transporting ATPase superfamily signature | 717 | 727 | - | - | |
Sed05g3458 | 888 | PRINTS | P-type cation-transporting ATPase superfamily signature | 767 | 786 | - | - | |
Sed05g3458 | 888 | Gene3D | - | 648 | 701 | IPR023299 | GO:0000166(InterPro) | |
Sed05g3458 | 888 | Gene3D | - | 529 | 823 | IPR023214 | - | |
Sed05g3458 | 888 | PANTHER | P-TYPE CATION-TRANSPORTING ATPASE | 32 | 884 | - | - | |
Sed05g3458 | 888 | Gene3D | - | 331 | 453 | - | - | |
Sed05g3458 | 888 | SUPERFAMILY | Calcium ATPase, transduction domain A | 364 | 449 | IPR008250 | - | |
Sed05g3458 | 888 | Pfam | E1-E2 ATPase | 363 | 541 | - | - | |
Sed05g3458 | 888 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 315 | 837 | IPR023298 | - | |
Sed05g3458 | 888 | FunFam | Copper-transporting ATPase 1, putative | 331 | 453 | - | - | |
Sed05g3458 | 888 | NCBIfam | HAD-IC family P-type ATPase | 316 | 844 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase 1 signature | 99 | 119 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase 1 signature | 239 | 259 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase 1 signature | 204 | 225 | - | - | |
Sed05g3458 | 888 | PRINTS | Copper-transporting ATPase 1 signature | 259 | 284 | - | - | |
Sed05g3458 | 888 | SUPERFAMILY | HMA, heavy metal-associated domain | 44 | 111 | IPR036163 | GO:0046872(InterPro) | |
Sed05g3458 | 888 | Pfam | haloacid dehalogenase-like hydrolase | 559 | 774 | - | - | |
Sed05g3458 | 888 | NCBIfam | heavy metal translocating P-type ATPase | 276 | 876 | IPR027256 | GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3458 | Sed-Chr5:43433441 | Sed14g0722 | Sed-Chr14:7434904 | 5.60E-232 | dispersed | |
Sed05g3458 | Sed-Chr5:43433441 | Sed14g1639 | Sed-Chr14:24568967 | 4.60E-186 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3458 | K17686 | - | csv:101214276 | 1298.88 |