Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3462 ATGTGGGATCTCAATGATTCGCCCGATCATGGCCGGACTGATGAATTTGACGACAGAGACAAATGGGCTGTAGGATCCGTTCATTCCAACTCCACCTCCTCCGTCGTGGTCATGGAGGATGGATCCGACGCCGATGAGCCCCAACCGGCGACTCATCAGTTCTTCCCTTTAGAAGATTCCGACGTGGCTACTGTCGGCAGCCGCGGAAGTTGTTCTACCAGCTTCCCTCAAGCTCGGTGGGTCGGTGTGAAGTTTTGCGAGACGGAGCCCGTCGCCGTCGTGAGACCGGTGGCGGTTCTCCAGCCAATGAAGAAAAGCCGACGAGGACCGAGGTCTCGGAGCTCTCAATATCGCGGCGTTACGTTTTACCGGCGAACCGGCCGGTGGGAATCTCATATATGGGACTGTGGCAAACAAGTTTATTTGGGCGGATTTGACACAGCTCATTCAGCTGCTCGAGCGTATGATAGAGCGGCTATAAAGTTTCGAGGATCAGAGGCAGACATAAATTTCAGATTTGAAGACTACGAGGAAGATTTGAAGCAGATGGGGAGTTTGACTAAGGAAGAATTTGTACATGTTCTTCGAAGACAAAGCACGGGTTATCCGAGAGGAAGCTCGAAATTTCGAGGTGTTACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTCTTAGGCAAAAAGTATGTTTATTTGGGGCTGTTCGATTCCGAGATCGAAGCTGCGCGAGCTTATGACAAAGCTGCAATCAAATGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGATTGAGCTGAGTACAACTGAATCATCGGACAAACTCTTGGAACAAAATCTTGATCTGAGGTTGGGAAATTCAAGCTCAAAACAAAACACCCTTTTATTTGGGAATCGTTGCCCAAATGTCACTAGTAGAATTGATCTGCAAAATAAGGAGTCTAACCCTCAGGAACCAAATATTGATGAGAATGACAATGGTAGAAGATACACATTCCTTCAAACAGAAAACATGCAGTTCTGTAGCGAAACGATCGTTCGGTCTCCACCCTCCGTCGAAACAACAATACATGGGCATCTGGAGGCACCTATGGAATTGCAGATTCTTCACAATTACTCCCCAGAGAACAATCAATCAAACTCTCAAGTAATATTTTGGTACTTTAAGTTGTTATTTTACCATATTTTGCTCTCCATAGACTTTGTGTGTATATCTCTGATAACTAGTGGCCATTTAGTTTTCAACTTTAAAAAAAAATGA 1281 45.51 MWDLNDSPDHGRTDEFDDRDKWAVGSVHSNSTSSVVVMEDGSDADEPQPATHQFFPLEDSDVATVGSRGSCSTSFPQARWVGVKFCETEPVAVVRPVAVLQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGSEADINFRFEDYEEDLKQMGSLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEIELSTTESSDKLLEQNLDLRLGNSSSKQNTLLFGNRCPNVTSRIDLQNKESNPQEPNIDENDNGRRYTFLQTENMQFCSETIVRSPPSVETTIHGHLEAPMELQILHNYSPENNQSNSQVIFWYFKLLFYHILLSIDFVCISLITSGHLVFNFKKK 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43468200 43470598 - Sed0009625.2 Sed05g3462 716088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3462 426 SUPERFAMILY DNA-binding domain 207 267 IPR016177 GO:0003677(InterPro)
Sed05g3462 426 Pfam AP2 domain 116 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 Pfam AP2 domain 207 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 ProSiteProfiles AP2/ERF domain profile. 116 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 ProSiteProfiles AP2/ERF domain profile. 208 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 FunFam AP2-like ethylene-responsive transcription factor 115 174 - -
Sed05g3462 426 PRINTS Ethylene responsive element binding protein signature 247 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 PRINTS Ethylene responsive element binding protein signature 209 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 Gene3D AP2/ERF domain 207 266 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 Gene3D AP2/ERF domain 115 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 SUPERFAMILY DNA-binding domain 115 173 IPR016177 GO:0003677(InterPro)
Sed05g3462 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 53 318 - -
Sed05g3462 426 MobiDBLite consensus disorder prediction 33 52 - -
Sed05g3462 426 FunFam AP2-like ethylene-responsive transcription factor 207 267 - -
Sed05g3462 426 CDD AP2 116 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 SMART rav1_2 208 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 SMART rav1_2 116 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3462 426 CDD AP2 207 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3462 Sed-Chr5:43468200 Sed14g0860 Sed-Chr14:17108621 7.80E-123 dispersed
Sed05g3461 Sed-Chr5:43466748 Sed05g3462 Sed-Chr5:43468200 1.70E-229 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38727 PF00847 AP2 1.70E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3462 K09284 - csv:101208665 596.66