Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3471 ATGGAGCGAAAAACAGTAGCCGTTATCGGCGCCGGAGTAAGCGGACTTATGGCCTGCAAATTCATCCTCTCCAAAGGATTGACTCCCATGGTGTTGGAGGCCAGAGACGCCATCGGCGGCCTCTGGGCGGAGACGCTGCACTCGACCGCGCTGCAGACGCCGAAACAGCTGTACCAATTCTCCGATTTCCCCTGGCCCGAATCCGTCACGGGGGACTTTCCGAAGTACGACCAAGTTCTCGAGTACTTCGAATCTTATGCCCAGCATTTCGGGTTGTTGAAGCACATCAGGTTTAACTCTCGAGTCTTGAGTGTTCAATTTGAAGGCGGCTCCGATGATGAAATTGAAGGTTGGACTCTTTGGGGCGGCTCGGGTCAGCCTTTCGATCCACGCCGGAAATGGAGGCTCCATGTCGTTGATGCCAAGACTGATGTACCGTTTGAGGAGGTGGTGGTGGACTTTGTAGTGCTCTGCATTGGAAGATTCAGCGATGTTCCAAACATCCCAGAATTCCCTCCCAATGGAGGCCCCCAAGCTTTTAAGTCTGGTGAAGTTCTTCACTCTCTTCAATACTCCGCCATGGATTTCAACTCTGCTTCGAAGCTCATCGAGGACAAGCAAGTCACCGTTGTCGGGCTTCAAAAGTCCGCTCTCGATCTCGCCATGGAATGCGCCAATGCCAATGGCCCTGAGAAACCTTGTACACTTCTCTACAGAACAGTGCATTGGAACCTTACAGATTATTGTCCATGGGGAATCCCTTTAGGTTTTCTTTACCTGAATCGATTCTCCCAATTTCTAATTCACAAACCTGGCGAAAGCTTCCTTCTCTACCTTCTCGCAATTCTTCTCTCCCCAATTAGATGGTTGTTTTCGAAGATCGTAGAAACCCATTTGAAGAAGATGAATGGATTAGCCAAATATGGGATGGTTCCAAATCATAGCTTTCTGCAGGATGTAAGCTCGTGTTTGTTTTCGACATTGCCTAAGAGCTTTTATGACAAAGTGGATGAAGGGAGCATCATTTTGAAGAAATCTCCGAGTTTTAGATTCTGTGAAGATGGGGTTTTGATCGAAGGCGAAACCGAACCGATTCGGTCCGATTTGGTGATTTTGGCTACTGGTTACAGAGGTGATTTGAAGCTTAAACAAATCTTTGCTTCCTCTGCTTTCAGAGATTACATGACGTTTTATGATTCATCGGTTCCTTTGTACAGGCAATGCGTTCATCCCAAAATTCCACAGCTAGCTGTGGTTGGATATTCGGAGAGCGGTTCAAACTTGTTCACCTCAGAGCTACGATGTCGATGGCTAGCAGAGTTTATGGACGGTACGTTCAAGCTACCGAGCATCAAGGAGATGGAGAAGGACATAGCGAATTGGGAGAAGGGTATAAGGGTCTACTCAGGCCCTTACTACAAGAGAGCTTGTATTGCTGCTTTGCATGTTTGGTACAGTGATCAACTTTGCAAAGACATTGGGTGGAACCACAAGAGAAAAAATGGCTTCTTTTCTGACTTATTTATGCCCTATGGTCCTTTAGATTATGCCTCCCCTTGA 1560 47.31 MERKTVAVIGAGVSGLMACKFILSKGLTPMVLEARDAIGGLWAETLHSTALQTPKQLYQFSDFPWPESVTGDFPKYDQVLEYFESYAQHFGLLKHIRFNSRVLSVQFEGGSDDEIEGWTLWGGSGQPFDPRRKWRLHVVDAKTDVPFEEVVVDFVVLCIGRFSDVPNIPEFPPNGGPQAFKSGEVLHSLQYSAMDFNSASKLIEDKQVTVVGLQKSALDLAMECANANGPEKPCTLLYRTVHWNLTDYCPWGIPLGFLYLNRFSQFLIHKPGESFLLYLLAILLSPIRWLFSKIVETHLKKMNGLAKYGMVPNHSFLQDVSSCLFSTLPKSFYDKVDEGSIILKKSPSFRFCEDGVLIEGETEPIRSDLVILATGYRGDLKLKQIFASSAFRDYMTFYDSSVPLYRQCVHPKIPQLAVVGYSESGSNLFTSELRCRWLAEFMDGTFKLPSIKEMEKDIANWEKGIRVYSGPYYKRACIAALHVWYSDQLCKDIGWNHKRKNGFFSDLFMPYGPLDYASP 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43509662 43515813 + Sed0006573.1 Sed05g3471 716097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3471 519 Pfam Flavin-binding monooxygenase-like 4 494 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Sed05g3471 519 SUPERFAMILY FAD/NAD(P)-binding domain 352 516 IPR036188 -
Sed05g3471 519 FunFam Flavin-containing monooxygenase 1 176 - -
Sed05g3471 519 Gene3D - 353 504 IPR036188 -
Sed05g3471 519 Gene3D - 2 250 IPR036188 -
Sed05g3471 519 PIRSF FMO 2 511 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Sed05g3471 519 PANTHER DIMETHYLANILINE MONOOXYGENASE 3 512 IPR050346 -
Sed05g3471 519 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Sed05g3471 519 FunFam Flavin-containing monooxygenase 356 508 - -
Sed05g3471 519 SUPERFAMILY FAD/NAD(P)-binding domain 1 251 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3471 K00485 - - csv:101206134 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0636 Sed-Chr1:4578149 Sed05g3471 Sed-Chr5:43509662 1.40E-230 dispersed
Sed01g0637 Sed-Chr1:4596017 Sed05g3471 Sed-Chr5:43509662 4.40E-237 dispersed
Sed05g3471 Sed-Chr5:43509662 Sed12g2330 Sed-Chr12:33315274 4.20E-163 dispersed
Sed05g3470 Sed-Chr5:43496851 Sed05g3471 Sed-Chr5:43509662 2.50E-242 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g235 . Blo15g00431 Bda06g00437 . . . . . . . Cma02g00293 . Car02g00172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3471 Cmo02g00287 . . . . . . . Bhi10g01237 Tan05g1065 Cmetu11g0158 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000621 2 8 2 2 1 4 2 5 5 4 3 5 4 3 4 4 4 1 1 3 4 3 2 4 4 3 1 4 3 7 102