Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3473 ATGGCGTTGAGGCTGCCCACACAGCTGGCGACACCTGGCAACCTCCACCGGCGCCGCCGCGACGCCTTCTCCTCCCGCCGCGCGTTGGCCGCCACCGACGGTCTCTTCTCGTCGTTTCTTTCCCTCACCTCTCCCTGCGCTTCATCTTCCTCCGGGAGATCTTCACTGCTACCGGTAGTGAGATGTACGGCACAGCAAACTGGAGCTGTGAATCTGGCGCCAGGGACGCCGGTGAGGCCGACGAGCATACTGGTGGTTGGCGCCACTGGAACCCTAGGTAGGCAGATCGTGAGGCGCGCGTTGGATGAAGGCTACGATGTTCGGTGTCTCGTCAGGCCTCGACCGGCTCCTGCTGATTTTCTTCGCGATTGGGGCGCTATAGTCGTCAATGCAGATTTGAGCAAACCAGAAACTATTCCTGCAACGTTGGTCGGAATTCATACCATCATAGACTGTGCTACTGGACGGCCGGAAGAGCCCATTAAAACGGTAGATTGGGAAGGAAAAGTTGCCCTGATACAATGTGCAAAGGCTATGGGAATCCAGAAATATATTTTCTTCTCCATCCATAACTGTGACAAGCATCCTGAGGTTCCACTCATGGAGATCAAGTATTGCACTGAGAAGTTTCTCAAGGACGCAGGCCTTAATCACATCATCATTCGGCTTTGTGGTTTCATGCAAGGTCTCATTGGGCAGTATGCTGTACCTATATTAGAAGAGAAATCTGTTTGGGGAACAGATGCTCCAACAAGAATTGCCTACATGGACACCCAGGATATAGCCAGGTTGACATTTATTGCACTGCGTAATGAGAGTATAAATGGGAAACTTCTTACCTTTGCTGGCCCTCGTGCATGGACAACTCAAGAGGTGATAACATTATGTGAGAGGCTTGCTGGACAAGATGCAAATGTTACTACTGTCCCAGTTTCAGTGTTGAGATTCACTCGTCAACTGACAAGGTTTTTTGAGTGGACAAATGATGTTGCTGATAGATTAGCATTTTCAGAGGTTCTTACAAGCGACACTGTTTTCTCTGTTGCAATGGCAGAGACATACAATCTGCTCGGTGTAGATGCAAAGGATATAATAACTTTAGAGAAATACTTGCAGGATTACTTCACAAACATTTTGAAGAAATTGAAGGATCTCAAAGCACAATCAAAGCAGTCAGACTTTTTTATATGA 1191 48.36 MALRLPTQLATPGNLHRRRRDAFSSRRALAATDGLFSSFLSLTSPCASSSSGRSSLLPVVRCTAQQTGAVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGAIVVNADLSKPETIPATLVGIHTIIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYIFFSIHNCDKHPEVPLMEIKYCTEKFLKDAGLNHIIIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNESINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRFTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVAMAETYNLLGVDAKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDFFI 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43527741 43534508 + Sed0018198.1 Sed05g3473 716099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3473 396 Pfam NmrA-like family 83 304 IPR008030 -
Sed05g3473 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 353 IPR036291 -
Sed05g3473 396 CDD SDR_a5 83 285 - -
Sed05g3473 396 FunFam uncharacterized protein ycf39 isoform X1 82 372 - -
Sed05g3473 396 Gene3D - 82 363 - -
Sed05g3473 396 PANTHER - 41 396 IPR044256 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3473 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3473 Sed-Chr5:43527741 Sed05g2744 Sed-Chr5:38813346 1.00E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g241 . . . . . . . Bma12g00864 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00822 . . . . . . . . . . . Sed05g3473 . . . . . . . . Bhi10g01234 Tan05g1067 Cmetu11g0438 . Hepe08g0332 . . . . . . . . . . . . Cme11g01219
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009131 1 1 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 34