Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3478 ATGCAAATATTTTCATTCTACAAGTATATAACTACTGATCATGTAACTACTCTTGGCAGAAACCAGAGCAGGGTAATGGAAGGGAAGGTGGTAAAATCCAGGTTCAAAAGGGTTTGTGTGTTTTGTGGGAGCAGCACAGGGAAGAGAGACTGCTATAGAGATGCAGCCATTGATTTAGCTCAGGAGCTGGTTTCAAGGAGGTTGGAGCTTGTTTATGGAGGTGGGAGCATTGGGCTAATGGGTCTGGTTTCACAAACTGTTCATGGTGGTGGAGGAAGGGTCATCGGGATCATTCCTAAAACATTAATGAACAAAGAGATAACTGGTGAAACAGTAGGGGAGGTAAAACCAGTAGACAACATGCATCAAAGGAAGGCAGAAATGGCCCGCCATTCAGATTGCTTTATAGCTCTACCAGGTGGGTATGGAACAATGGAGGAACTTTTAGAAGTGATCACATGGGCTCAACTAGGCATCCATGACAAACCAATTGGATTGCTGAATGTGGACGGCTACTACAACTACCTCCTCACCTTCATCGACCAAGCAGTGGACGATGGATTCATAAAACCATCACAACGCAACATCATAGTGTCCGCACACAACGCCAAGGACCTGGTTCAGAAGTTAGAGGAGTACGTGCCTGTACATAACGAAGTGATGGGCAAAGCGAAATGGGAAATTGAGCAGCCACCTCAACAGCAACAGCAACAGCAACAAAAACAAATGGGGTTCGAACCCAAATCTTTTCAGGCTCAAATCGCCCGGTAA 771 45.4 MQIFSFYKYITTDHVTTLGRNQSRVMEGKVVKSRFKRVCVFCGSSTGKRDCYRDAAIDLAQELVSRRLELVYGGGSIGLMGLVSQTVHGGGGRVIGIIPKTLMNKEITGETVGEVKPVDNMHQRKAEMARHSDCFIALPGGYGTMEELLEVITWAQLGIHDKPIGLLNVDGYYNYLLTFIDQAVDDGFIKPSQRNIIVSAHNAKDLVQKLEEYVPVHNEVMGKAKWEIEQPPQQQQQQQQKQMGFEPKSFQAQIAR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43586872 43588511 - Sed0004752.1 Sed05g3478 716104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3478 256 MobiDBLite consensus disorder prediction 229 247 - -
Sed05g3478 256 SUPERFAMILY MCP/YpsA-like 34 213 - -
Sed05g3478 256 Gene3D - 25 212 - -
Sed05g3478 256 PANTHER LOG FAMILY PROTEIN YJL055W 32 234 - GO:0005829(PANTHER)|GO:0009691(PANTHER)|GO:0016799(PANTHER)
Sed05g3478 256 FunFam CASP-like protein 26 212 - -
Sed05g3478 256 NCBIfam Rossman fold protein, TIGR00730 family 36 213 IPR005269 GO:0009691(InterPro)|GO:0016787(InterPro)
Sed05g3478 256 MobiDBLite consensus disorder prediction 228 256 - -
Sed05g3478 256 Pfam Possible lysine decarboxylase 80 210 IPR031100 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3478 K22522 - - csv:101206133 409.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3810 Sed-Chr4:46602016 Sed05g3478 Sed-Chr5:43586872 2.60E-101 dispersed
Sed05g3478 Sed-Chr5:43586872 Sed08g1825 Sed-Chr8:33005533 1.00E-93 dispersed
Sed05g2192 Sed-Chr5:34718708 Sed05g3478 Sed-Chr5:43586872 7.60E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3478 . . . . . . . . Bhi10g01226 Tan05g1073 Cmetu11g1629 . Hepe08g0327 . . . . . . . . . . . . Cme11g01234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287