Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3488 ATGGCCAACGAAGAAGACGATCTGGATCTTCTCCTCTCTCTCCAAGATAAAGTTGCTGAAACTCCTCCTCGAACTCCGCCTCACACTTCAGATATTCTATCGGACGATGAATCGCCGACACGAGCCGCTCCTTCGGATATGTCTATCTTCAGAAACGCTGTCAAAGACTGCTTGGATTATGATCATATATCAACTGAAAGAAGTGGAAAAACAAACCGATCGAAGGCCTCGAATGATGTTACTGTCGACAAATTCTCTGGTCTGCGAGTGAGGAATCAACTTGTGGAACCTGCAGAGCTTCGTGATCGTTTTGCTGACATTCGCTTTGTTCGTTTGTCTACCATAAAGAATCTGTTGGTTGGGGACACCCTTTCAGGCTGTTGGGTGACTGTCGGAGTGTTGACTGAAAAAGGGAGTCCAAAGACAAGCTCCACAGGGAAAGCTTATTGTATCTGGAAACTTAGTTGTTTGGATGAAAACATTGTTTCTATTTTCTTATTTGGTGATGCTTATAAAAGAAATTGCAAGGAGTCGGCTGGAACTGTTCTTGCACTTTTTAACTCTACCGTACGCAAGGATCCAATGGGCGTAGGGTTTTCTTTAAGTGTGTATCAACCGAGCCAATTGTTAAAGATGGGCACTTCAGATGACTATGGGGTATGTAAGGGGAAGAAGAAGGATGGAATGGCCTGCACAACAGTAGTAAACAGGCGACGTGGCATACACTGCAAATATCATAAATTAAAGGTATCAGAAAAATATTCCACAACCATACGAACTGAGCTCAAAGGAGGGAATTTGAGGACTGGATTCAGAGATCATCATCTCAAGGCAGAAGGAGTTTACATGGTAGATCCACTAGCTCGTAAAGTAAATTTAAAAAAGCCAGCGCCGCCAGTAAAACTATTGTCCGTTGAAGGCCTAAAAAAGGCATTGAGCAATGCAGATAAAGTAACCACCAATGTACACTCACAAGGGAAAAGATTCCTTGCTGAGATCACAGGGAAATTGAGTAATAAAAGTGAAAATAATGAACCAACCAAACAAAATAAGCAAAGGATCAGTTCAGAGAAGACGTCAATTTCGAAGTCATCCACAATGAAAATGAATTCAGGAGTTGAAAACCAACAACCAGATCCCAAAAGAAAGAAAACCAACCATACTCCGGCCGACGAACCCACAAATAACATTGGAAAGATGATTGAGCTGGATTGTGTTAGTTCAGATGACGAATTCGACATTATATTCACCGTATAA 1257 41.85 MANEEDDLDLLLSLQDKVAETPPRTPPHTSDILSDDESPTRAAPSDMSIFRNAVKDCLDYDHISTERSGKTNRSKASNDVTVDKFSGLRVRNQLVEPAELRDRFADIRFVRLSTIKNLLVGDTLSGCWVTVGVLTEKGSPKTSSTGKAYCIWKLSCLDENIVSIFLFGDAYKRNCKESAGTVLALFNSTVRKDPMGVGFSLSVYQPSQLLKMGTSDDYGVCKGKKKDGMACTTVVNRRRGIHCKYHKLKVSEKYSTTIRTELKGGNLRTGFRDHHLKAEGVYMVDPLARKVNLKKPAPPVKLLSVEGLKKALSNADKVTTNVHSQGKRFLAEITGKLSNKSENNEPTKQNKQRISSEKTSISKSSTMKMNSGVENQQPDPKRKKTNHTPADEPTNNIGKMIELDCVSSDDEFDIIFTV 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43666024 43670527 + Sed0003263.1 Sed05g3488 716114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3488 418 FunFam DNA replication licensing factor mcm10 74 247 - -
Sed05g3488 418 Pfam Primase zinc finger 213 255 IPR015408 GO:0005634(InterPro)|GO:0006260(InterPro)
Sed05g3488 418 MobiDBLite consensus disorder prediction 336 376 - -
Sed05g3488 418 PANTHER PROTEIN MCM10 HOMOLOG 2 387 IPR040184 GO:0003688(PANTHER)|GO:0003690(InterPro)|GO:0003697(InterPro)|GO:0003697(PANTHER)|GO:0006270(PANTHER)|GO:0006270(InterPro)|GO:0043596(PANTHER)
Sed05g3488 418 MobiDBLite consensus disorder prediction 16 44 - -
Sed05g3488 418 Pfam MCM10 OB-fold 84 210 IPR055065 -
Sed05g3488 418 Gene3D - 73 247 IPR012340 -
Sed05g3488 418 MobiDBLite consensus disorder prediction 333 399 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3488 K10736 - csv:101219022 655.21