Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3492 ATGGAAGTTGGTGAGCTTGAATCCTCGAATCCGGAAGGGTTTTTGAGTTCGAATGCGGTTGAGATTCCGATTAGTTGCTCGATGGATAGTTTCTTGGATGAAATTCTGAAGGATACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCTCATACACACACATGTTTTCATGTCCATACTAAACTTGTCTCCTCACCTACCGAAGAGAAGGTTTCCACTGATGACACCGCGGATTCTGTGGATAAGAAGACCAAGAAACGCCCGCCAGGTAACCGTGAAGCAGTTCGTAAATATCGTGAGAAGAAAAAGGAAAGAGCTGCATCATTGGAACATGAAGTTGTGAGGCTGAGAACCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTAGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAGTTGAAGGGGAGATTGGAGCGTATCCATATCCAAAACCAGCTAATTCAAATCTTCCCAGCCAAAATTTAGCTGGTAGTTACATGATAAACCCATGTAATGCGCAGTGCAATGATCAGGCGTACTACCTTCATCCAGGGGCCGATGGTAAAAGTGGAGAGAGCGATTTGTTGAATGAACAAAATTTTAGTGAGTATGACCTCCTCAGAAATCTTCAGTGCTTGGCAAATCAGAACTCGGGAGCGCAGGAACTTCTGGAGTGTGGATTAGGGGACACAATTTCTAACGTTAATTGCTCTGATTTAAATCAGAAGAAAGGAGGAGGGGTCTGTAAGAAGACCAAAAATGGGAAGAGCTGA 825 44.48 MEVGELESSNPEGFLSSNAVEIPISCSMDSFLDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKLVSSPTEEKVSTDDTADSVDKKTKKRPPGNREAVRKYREKKKERAASLEHEVVRLRTLNQQLLKRLQGQAALEAEISRLKCLLVDIRGRVEGEIGAYPYPKPANSNLPSQNLAGSYMINPCNAQCNDQAYYLHPGADGKSGESDLLNEQNFSEYDLLRNLQCLANQNSGAQELLECGLGDTISNVNCSDLNQKKGGGVCKKTKNGKS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43687714 43691553 + Sed0017397.1 Sed05g3492 716118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3492 274 Gene3D - 75 153 - -
Sed05g3492 274 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3492 274 Coils Coil 105 132 - -
Sed05g3492 274 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3492 274 SMART brlzneu 84 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3492 274 MobiDBLite consensus disorder prediction 69 110 - -
Sed05g3492 274 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3492 274 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 182 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Sed05g3492 274 CDD bZIP 97 144 - -
Sed05g3492 274 MobiDBLite consensus disorder prediction 77 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0193 Sed-Chr1:1506269 Sed05g3492 Sed-Chr5:43687714 1.30E-102 dispersed
Sed01g0194 Sed-Chr1:1506269 Sed05g3492 Sed-Chr5:43687714 1.70E-107 dispersed
Sed05g3492 Sed-Chr5:43687714 Sed05g3494 Sed-Chr5:43687714 1.40E-133 dispersed
Sed05g3492 Sed-Chr5:43687714 Sed05g3493 Sed-Chr5:43687714 1.40E-133 tandem
Sed01g0191 Sed-Chr1:1506269 Sed05g3492 Sed-Chr5:43687714 1.70E-107 wgd
Sed04g3852 Sed-Chr4:46897768 Sed05g3492 Sed-Chr5:43687714 9.50E-74 wgd
Sed05g2217 Sed-Chr5:34956719 Sed05g3492 Sed-Chr5:43687714 3.40E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38730 PF07716 bZIP_2 1.00E-15 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3492 K25785 - csv:101219501 459.529