Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3492 | ATGGAAGTTGGTGAGCTTGAATCCTCGAATCCGGAAGGGTTTTTGAGTTCGAATGCGGTTGAGATTCCGATTAGTTGCTCGATGGATAGTTTCTTGGATGAAATTCTGAAGGATACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCTCATACACACACATGTTTTCATGTCCATACTAAACTTGTCTCCTCACCTACCGAAGAGAAGGTTTCCACTGATGACACCGCGGATTCTGTGGATAAGAAGACCAAGAAACGCCCGCCAGGTAACCGTGAAGCAGTTCGTAAATATCGTGAGAAGAAAAAGGAAAGAGCTGCATCATTGGAACATGAAGTTGTGAGGCTGAGAACCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTAGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAGTTGAAGGGGAGATTGGAGCGTATCCATATCCAAAACCAGCTAATTCAAATCTTCCCAGCCAAAATTTAGCTGGTAGTTACATGATAAACCCATGTAATGCGCAGTGCAATGATCAGGCGTACTACCTTCATCCAGGGGCCGATGGTAAAAGTGGAGAGAGCGATTTGTTGAATGAACAAAATTTTAGTGAGTATGACCTCCTCAGAAATCTTCAGTGCTTGGCAAATCAGAACTCGGGAGCGCAGGAACTTCTGGAGTGTGGATTAGGGGACACAATTTCTAACGTTAATTGCTCTGATTTAAATCAGAAGAAAGGAGGAGGGGTCTGTAAGAAGACCAAAAATGGGAAGAGCTGA | 825 | 44.48 | MEVGELESSNPEGFLSSNAVEIPISCSMDSFLDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKLVSSPTEEKVSTDDTADSVDKKTKKRPPGNREAVRKYREKKKERAASLEHEVVRLRTLNQQLLKRLQGQAALEAEISRLKCLLVDIRGRVEGEIGAYPYPKPANSNLPSQNLAGSYMINPCNAQCNDQAYYLHPGADGKSGESDLLNEQNFSEYDLLRNLQCLANQNSGAQELLECGLGDTISNVNCSDLNQKKGGGVCKKTKNGKS | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43687714 | 43691553 | + | Sed0017397.1 | Sed05g3492 | 716118 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3492 | 274 | Gene3D | - | 75 | 153 | - | - | |
Sed05g3492 | 274 | Pfam | Basic region leucine zipper | 87 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3492 | 274 | Coils | Coil | 105 | 132 | - | - | |
Sed05g3492 | 274 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3492 | 274 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3492 | 274 | MobiDBLite | consensus disorder prediction | 69 | 110 | - | - | |
Sed05g3492 | 274 | SUPERFAMILY | Leucine zipper domain | 89 | 135 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g3492 | 274 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 182 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) | |
Sed05g3492 | 274 | CDD | bZIP | 97 | 144 | - | - | |
Sed05g3492 | 274 | MobiDBLite | consensus disorder prediction | 77 | 110 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0193 | Sed-Chr1:1506269 | Sed05g3492 | Sed-Chr5:43687714 | 1.30E-102 | dispersed | |
Sed01g0194 | Sed-Chr1:1506269 | Sed05g3492 | Sed-Chr5:43687714 | 1.70E-107 | dispersed | |
Sed05g3492 | Sed-Chr5:43687714 | Sed05g3494 | Sed-Chr5:43687714 | 1.40E-133 | dispersed | |
Sed05g3492 | Sed-Chr5:43687714 | Sed05g3493 | Sed-Chr5:43687714 | 1.40E-133 | tandem | |
Sed01g0191 | Sed-Chr1:1506269 | Sed05g3492 | Sed-Chr5:43687714 | 1.70E-107 | wgd | |
Sed04g3852 | Sed-Chr4:46897768 | Sed05g3492 | Sed-Chr5:43687714 | 9.50E-74 | wgd | |
Sed05g2217 | Sed-Chr5:34956719 | Sed05g3492 | Sed-Chr5:43687714 | 3.40E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38730 | PF07716 | bZIP_2 | 1.00E-15 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3492 | K25785 | - | csv:101219501 | 459.529 |