Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3495 ATGGAAGTTGGTGAGCTTGAATCCTCGAATCCGGAAGGGTTTTTGAGTTCGAATGCGGTTGAGATTCCGATTAGTTGCTCGATGGATAGTTTCTTGGATGAAATTCTGAAGGATACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCTCATACACACACATGTTTTCATGTCCATACTAAACTTGTCTCCTCACCTACCGAAGAGAAGGTTTCCACTGATGACACCGCGGATTCTGTGGATAAGAAGACCAAGAAACGCCCGCCAGGTAACCGTGAAGCAGTTCGTAAATATCGTGAGAAGAAAAAGGAAAGAGCTGCATCATTGGAACATGAAGTTGTGAGGCTGAGAACCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTAGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAGTTGAAGGGGAGATTGGAGCGTATCCATATCCAAAACCAGCTAATTCAAATCTTCCCAGCCAAAATTTAGCTGGTAGTTACATGATAAACCCATGTAATGCGCAGTGCAATGATCAGGCGTACTACCTTCATCCAGGGGCCGATGGTAAAAGTGGAGAGAGCGATTTGTTGAATGAACAAAATTTTAGTGAGTATGACCTCCTCAGAAATCTTCAGTGCTTGGCAAATCAGAACTCGGGAGCGCAGGAACTTCTGGAGTGTGGATTAGGGGACACAATTTCTAACGTTAATTGCTCTGATTTAAATCAGAAGAAAGGTGAAATCTGGGCACTTAACTCTCAGTCTTAA 816 44.12 MEVGELESSNPEGFLSSNAVEIPISCSMDSFLDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKLVSSPTEEKVSTDDTADSVDKKTKKRPPGNREAVRKYREKKKERAASLEHEVVRLRTLNQQLLKRLQGQAALEAEISRLKCLLVDIRGRVEGEIGAYPYPKPANSNLPSQNLAGSYMINPCNAQCNDQAYYLHPGADGKSGESDLLNEQNFSEYDLLRNLQCLANQNSGAQELLECGLGDTISNVNCSDLNQKKGEIWALNSQS 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43687714 43691553 + Sed0017397.4 Sed05g3495 716121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3495 271 MobiDBLite consensus disorder prediction 70 110 - -
Sed05g3495 271 Gene3D - 75 153 - -
Sed05g3495 271 Coils Coil 105 132 - -
Sed05g3495 271 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3495 271 SMART brlzneu 84 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3495 271 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3495 271 Pfam Basic region leucine zipper 87 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g3495 271 CDD bZIP 97 144 - -
Sed05g3495 271 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 182 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Sed05g3495 271 MobiDBLite consensus disorder prediction 77 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3493 Sed-Chr5:43687714 Sed05g3495 Sed-Chr5:43687714 1.70E-139 dispersed
Sed05g3494 Sed-Chr5:43687714 Sed05g3495 Sed-Chr5:43687714 1.70E-139 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38733 PF07716 bZIP_2 3.80E-15 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3495 K25785 - csv:101219501 436.417