Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3504 | ATGGCGGATTCTCAGCCGCTGCTTAAGAATCAACCGGAGTTGCCGGAGTCCAGTCGAAAAGCTCCGCGTGTTGTCTCACTCGACGTGTTTCGCGGTCTCAGTGTCTTTATGATGGTTTTTGTGGACTACGGTGGCTCTTTTTTACCAATCGTCGCTCATTCGCCATGGAATGGACTACGTTTGGCTGATTTTGTAATGCCTTGGTTTCTATTTATTGCGGGAGTCTCGCTTGCACTTGTTTATAAAGAGGTAAAATGTAAAGTGACCGCTACAAAGAAAGCAGCAGTCAGGGGTTTCTTCCTTTTTCTCCTGGGTGTTCTTCTTCAAGGTGGCTACTTTCATGGAATAACATCTTTGACATATGGTGTTGATATGGAAAGGATTAGGTGGCTTGGAATTTTGCAGAGAATATCTGCTGGATACTTGATTGCTGCAATATGTGAGATCTGGCTTACTCGTTGTACGCGTGAAGAAGCTCAAAATACTAAGAATTTCAGCTGGCACTGGTGTATAATATTTTTTCTGTTGTCATTGTATATGGGACTATCGTATGGTTTATATGTTCCAGATTGGGACTTTATAACATCAACCACGAGCTCTTCATTCCCACCATATGGAAGCCATGTTTACATGGTGAATTGTTCTGTTCGAGGTGATCTGGGGCCTGCTTGTAATTCTGCTGGGATGATCGATCGTTATGTGCTTGGTATTCATCATTTGTATGCTAAACCTGTGTACAGAAATCTGAAGGAGTGTAACATTTCCTCCGGTGGTCAAATTCCTGAGACTTCACCTTCATGGTGTCATGCTCCTTTTGAACCTGAAGGTCTTTTAAGCTCTATAACAGCTTCAGTAGCTTGCATAATAGGACTTCAGTATGGTCACATTCTTGCCAATATACAGGATCACAAAAGTCGCACCTATAGCTGGTTTTCACTCTCGCTTAAAATTTTGGCTCTCGGATTATTCCTTGTCTTTATAGGTATTCCTGTAAATAAGTCCCTCTACACAGTCAGCTATATGTTGATTACTTCAGCATCAGCAGGAATAATCTTTTGTGCTCTATATATCTTAAATTATAATGATAATAATCGTAAAATGAACGGTTTTCCCTTTTTTCCCTCTTGTGGATGTCCATGGCTATCGACGCTTGACATGTGTTCTGGAGTGGATGGGGAAGCACGCTTTGAGTGCACTGGATTTAATCGTAGTACTCGAGATCCTTGCAAAAGCATAAACGCTTGTAAGAAGAGAACAGAGCTATTGCAACTGGTTAAGGACTATGTAGATCCGCCACCAGCTCCATTGATGGAAGTCTCCGAGCTGAAGCAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTCATGGCAAGTCTCCTTTTTCTGTACATCACCATCGCCACTGTCATTGGAAACAATGCACAAACAGGACCTTGTTCTGGCGTTGGCCTCCTCGGCATAGCATGGGCCTTTGGCGCCATGATCTTCGTCCTTGTGTCGCTGTTCCGCGCGGTGGCTTACATGGCGGCACAGTGTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAATCTTTCACGAGGCACGCTTACAATAGCAGTAGCGGTGGAGCAAACCTCGTCGGTGACGGCATAAGCAAAGGCACCGCTCTCGGCGCAGAAATCATCGGCACTTTTCTGCTGGTGTACACTGTGTTCTCAGCCACTGACCCGAAGAGAAACGCTCGTGACTCTCATGTTCCTGTTTTGGCTCCATTGCCCATCGGTTTAGCCGTGTTTGTTGTGCATCCGGCCACAATTCCAATTACGGGCACTGGCACGGAGCTTAGGCGCCGCAGTCGTCTTCAACAACTCAAGACTTATGAGATTAATTGTATGGAATTGTGGCAGTGGATATTTTGGGTGGGGCCATTTGTAGGGGCAATGGCAGCGGCTGTGTACCATCAACACGTTCTCAGAGCGGCGGCCGTGAAGGCACTTGGATCTTTCCGCTCCAACCTCCGCTCACCCACGTCAGCATGA | 2019 | 45.86 | MADSQPLLKNQPELPESSRKAPRVVSLDVFRGLSVFMMVFVDYGGSFLPIVAHSPWNGLRLADFVMPWFLFIAGVSLALVYKEVKCKVTATKKAAVRGFFLFLLGVLLQGGYFHGITSLTYGVDMERIRWLGILQRISAGYLIAAICEIWLTRCTREEAQNTKNFSWHWCIIFFLLSLYMGLSYGLYVPDWDFITSTTSSSFPPYGSHVYMVNCSVRGDLGPACNSAGMIDRYVLGIHHLYAKPVYRNLKECNISSGGQIPETSPSWCHAPFEPEGLLSSITASVACIIGLQYGHILANIQDHKSRTYSWFSLSLKILALGLFLVFIGIPVNKSLYTVSYMLITSASAGIIFCALYILNYNDNNRKMNGFPFFPSCGCPWLSTLDMCSGVDGEARFECTGFNRSTRDPCKSINACKKRTELLQLVKDYVDPPPAPLMEVSELKQWSFYRAVIAEFMASLLFLYITIATVIGNNAQTGPCSGVGLLGIAWAFGAMIFVLVSLFRAVAYMAAQCLGAIAGVALVKSFTRHAYNSSSGGANLVGDGISKGTALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHPATIPITGTGTELRRRSRLQQLKTYEINCMELWQWIFWVGPFVGAMAAAVYHQHVLRAAAVKALGSFRSNLRSPTSA | 672 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43714884 | 43724230 | + | Sed0025960.1 | Sed05g3504 | 716130 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3504 | 672 | PRINTS | Major intrinsic protein family signature | 552 | 570 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g3504 | 672 | PRINTS | Major intrinsic protein family signature | 449 | 468 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g3504 | 672 | PRINTS | Major intrinsic protein family signature | 630 | 650 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g3504 | 672 | PRINTS | Major intrinsic protein family signature | 588 | 610 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g3504 | 672 | Gene3D | Glycerol uptake facilitator protein. | 434 | 668 | IPR023271 | - | |
Sed05g3504 | 672 | SUPERFAMILY | Aquaporin-like | 441 | 652 | IPR023271 | - | |
Sed05g3504 | 672 | Pfam | Major intrinsic protein | 499 | 647 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g3504 | 672 | Pfam | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic | 23 | 146 | IPR012429 | - | |
Sed05g3504 | 672 | PANTHER | LD22376P | 15 | 358 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3504 | Sed-Chr5:43714884 | Sed12g0499 | Sed-Chr12:2966741 | 4.40E-96 | dispersed | |
Sed04g3846 | Sed-Chr4:46838222 | Sed05g3504 | Sed-Chr5:43714884 | 1.50E-90 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3504 | - | - | - | 0.0 |