Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3504 ATGGCGGATTCTCAGCCGCTGCTTAAGAATCAACCGGAGTTGCCGGAGTCCAGTCGAAAAGCTCCGCGTGTTGTCTCACTCGACGTGTTTCGCGGTCTCAGTGTCTTTATGATGGTTTTTGTGGACTACGGTGGCTCTTTTTTACCAATCGTCGCTCATTCGCCATGGAATGGACTACGTTTGGCTGATTTTGTAATGCCTTGGTTTCTATTTATTGCGGGAGTCTCGCTTGCACTTGTTTATAAAGAGGTAAAATGTAAAGTGACCGCTACAAAGAAAGCAGCAGTCAGGGGTTTCTTCCTTTTTCTCCTGGGTGTTCTTCTTCAAGGTGGCTACTTTCATGGAATAACATCTTTGACATATGGTGTTGATATGGAAAGGATTAGGTGGCTTGGAATTTTGCAGAGAATATCTGCTGGATACTTGATTGCTGCAATATGTGAGATCTGGCTTACTCGTTGTACGCGTGAAGAAGCTCAAAATACTAAGAATTTCAGCTGGCACTGGTGTATAATATTTTTTCTGTTGTCATTGTATATGGGACTATCGTATGGTTTATATGTTCCAGATTGGGACTTTATAACATCAACCACGAGCTCTTCATTCCCACCATATGGAAGCCATGTTTACATGGTGAATTGTTCTGTTCGAGGTGATCTGGGGCCTGCTTGTAATTCTGCTGGGATGATCGATCGTTATGTGCTTGGTATTCATCATTTGTATGCTAAACCTGTGTACAGAAATCTGAAGGAGTGTAACATTTCCTCCGGTGGTCAAATTCCTGAGACTTCACCTTCATGGTGTCATGCTCCTTTTGAACCTGAAGGTCTTTTAAGCTCTATAACAGCTTCAGTAGCTTGCATAATAGGACTTCAGTATGGTCACATTCTTGCCAATATACAGGATCACAAAAGTCGCACCTATAGCTGGTTTTCACTCTCGCTTAAAATTTTGGCTCTCGGATTATTCCTTGTCTTTATAGGTATTCCTGTAAATAAGTCCCTCTACACAGTCAGCTATATGTTGATTACTTCAGCATCAGCAGGAATAATCTTTTGTGCTCTATATATCTTAAATTATAATGATAATAATCGTAAAATGAACGGTTTTCCCTTTTTTCCCTCTTGTGGATGTCCATGGCTATCGACGCTTGACATGTGTTCTGGAGTGGATGGGGAAGCACGCTTTGAGTGCACTGGATTTAATCGTAGTACTCGAGATCCTTGCAAAAGCATAAACGCTTGTAAGAAGAGAACAGAGCTATTGCAACTGGTTAAGGACTATGTAGATCCGCCACCAGCTCCATTGATGGAAGTCTCCGAGCTGAAGCAATGGTCGTTTTACAGAGCTGTAATTGCAGAGTTCATGGCAAGTCTCCTTTTTCTGTACATCACCATCGCCACTGTCATTGGAAACAATGCACAAACAGGACCTTGTTCTGGCGTTGGCCTCCTCGGCATAGCATGGGCCTTTGGCGCCATGATCTTCGTCCTTGTGTCGCTGTTCCGCGCGGTGGCTTACATGGCGGCACAGTGTCTGGGAGCCATTGCCGGCGTTGCATTGGTTAAATCTTTCACGAGGCACGCTTACAATAGCAGTAGCGGTGGAGCAAACCTCGTCGGTGACGGCATAAGCAAAGGCACCGCTCTCGGCGCAGAAATCATCGGCACTTTTCTGCTGGTGTACACTGTGTTCTCAGCCACTGACCCGAAGAGAAACGCTCGTGACTCTCATGTTCCTGTTTTGGCTCCATTGCCCATCGGTTTAGCCGTGTTTGTTGTGCATCCGGCCACAATTCCAATTACGGGCACTGGCACGGAGCTTAGGCGCCGCAGTCGTCTTCAACAACTCAAGACTTATGAGATTAATTGTATGGAATTGTGGCAGTGGATATTTTGGGTGGGGCCATTTGTAGGGGCAATGGCAGCGGCTGTGTACCATCAACACGTTCTCAGAGCGGCGGCCGTGAAGGCACTTGGATCTTTCCGCTCCAACCTCCGCTCACCCACGTCAGCATGA 2019 45.86 MADSQPLLKNQPELPESSRKAPRVVSLDVFRGLSVFMMVFVDYGGSFLPIVAHSPWNGLRLADFVMPWFLFIAGVSLALVYKEVKCKVTATKKAAVRGFFLFLLGVLLQGGYFHGITSLTYGVDMERIRWLGILQRISAGYLIAAICEIWLTRCTREEAQNTKNFSWHWCIIFFLLSLYMGLSYGLYVPDWDFITSTTSSSFPPYGSHVYMVNCSVRGDLGPACNSAGMIDRYVLGIHHLYAKPVYRNLKECNISSGGQIPETSPSWCHAPFEPEGLLSSITASVACIIGLQYGHILANIQDHKSRTYSWFSLSLKILALGLFLVFIGIPVNKSLYTVSYMLITSASAGIIFCALYILNYNDNNRKMNGFPFFPSCGCPWLSTLDMCSGVDGEARFECTGFNRSTRDPCKSINACKKRTELLQLVKDYVDPPPAPLMEVSELKQWSFYRAVIAEFMASLLFLYITIATVIGNNAQTGPCSGVGLLGIAWAFGAMIFVLVSLFRAVAYMAAQCLGAIAGVALVKSFTRHAYNSSSGGANLVGDGISKGTALGAEIIGTFLLVYTVFSATDPKRNARDSHVPVLAPLPIGLAVFVVHPATIPITGTGTELRRRSRLQQLKTYEINCMELWQWIFWVGPFVGAMAAAVYHQHVLRAAAVKALGSFRSNLRSPTSA 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43714884 43724230 + Sed0025960.1 Sed05g3504 716130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3504 672 PRINTS Major intrinsic protein family signature 552 570 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3504 672 PRINTS Major intrinsic protein family signature 449 468 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3504 672 PRINTS Major intrinsic protein family signature 630 650 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3504 672 PRINTS Major intrinsic protein family signature 588 610 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3504 672 Gene3D Glycerol uptake facilitator protein. 434 668 IPR023271 -
Sed05g3504 672 SUPERFAMILY Aquaporin-like 441 652 IPR023271 -
Sed05g3504 672 Pfam Major intrinsic protein 499 647 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3504 672 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 23 146 IPR012429 -
Sed05g3504 672 PANTHER LD22376P 15 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3504 Sed-Chr5:43714884 Sed12g0499 Sed-Chr12:2966741 4.40E-96 dispersed
Sed04g3846 Sed-Chr4:46838222 Sed05g3504 Sed-Chr5:43714884 1.50E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3504 - - - 0.0