Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3510 ATGTTCTCAGAGTTAATGAACATTTTGAGAGCTTGTTTTCGACCGAGGTCGGGTCGACATGTGTCCAAAGGTTCAAGTTCTGGTGGTCGACAGGATGGTCTTTTGTGGTACAAGGATAGCGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAAGATCAAAGCCAGATGGAGTCCGGCAATTTAAGTTTGCAAGAGTCTGGGCCGTATGGAACCTTTGTTGGAGTGTATGATGGGCACGGAGGGCCCGAGACATCGCGATATGTTAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAAGCCATGTCAGTGGATGTCATACGAAAGGCCTTTCAAGCTACCGAAGAGGGGATCATTGCTCTAGTTTCGAAACAATGGTCGATGAGGCCACAAATTGCATCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGGTGGAACCCTTTACATTGCGAACGCTGGTGACTCGCGAGCCGTTTTAGGGAGAGTTGTAAAGGCGACAGGACAAGTTTTGTCTGTCCAGTTGTCGGCTGAGCATAATGCATCTATAGAATCTGTAAGGCAGGAGCTTCGTGCGTTGCATCCTGATGACCCACAAATTGTAGTTTTGAAACATAATGTATGGCGTGTGAAGGGCATTATTCAGGTTTCTCGATCAATCGGAGATGTCTATTTGAAGAGAGCTGAATTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGCGATCCTATCAAAAAACCCATTTTGAGCGCTGAACCAACTACTTCAGTGCTCCAATTACAGCCACAAGATCAGTTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAAGAAGCTGTTGATATTGTCCAAAACCATCCACGTAGTGGGAGTGCAAGGAGGCTGGTGAAAGAAGCACTACAAGAAGCAGCAAAGAAGAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGTGGCATACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCAAATCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCATGCGAGGGGGCGGAGTTAACTTGCGTCCAAACTCATTGGCCCCTTGCACCACACCATCAGACACGGGCATGGCCTTATTATAG 1200 46.25 MFSELMNILRACFRPRSGRHVSKGSSSGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLQESGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQAMSVDVIRKAFQATEEGIIALVSKQWSMRPQIASVGSCCLVGVICGGTLYIANAGDSRAVLGRVVKATGQVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGIIQVSRSIGDVYLKRAEFNREPLYAKFRLRDPIKKPILSAEPTTSVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRSGSARRLVKEALQEAAKKREMRYSDLKKIDRGIRRHFHDDITVIVVFLDSNLVSRASSTKCASLSMRGGGVNLRPNSLAPCTTPSDTGMALL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43766552 43770435 + Sed0012682.1 Sed05g3510 716136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3510 399 PANTHER PROTEIN PHOSPHATASE 39 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g3510 399 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Sed05g3510 399 CDD PP2Cc 48 355 IPR001932 -
Sed05g3510 399 SMART PP2C_4 39 353 IPR001932 -
Sed05g3510 399 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Sed05g3510 399 Gene3D - 36 367 IPR036457 -
Sed05g3510 399 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Sed05g3510 399 FunFam Phosphatase 2C family protein 36 365 - -
Sed05g3510 399 Pfam Protein phosphatase 2C 75 324 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0662 Sed-Chr1:4862227 Sed05g3510 Sed-Chr5:43766552 4.30E-208 dispersed
Sed02g0366 Sed-Chr2:40498529 Sed05g3510 Sed-Chr5:43766552 5.60E-112 dispersed
Sed05g3510 Sed-Chr5:43766552 Sed10g1033 Sed-Chr10:9117671 3.60E-170 dispersed
Sed05g3510 Sed-Chr5:43766552 Sed05g3511 Sed-Chr5:43766552 3.70E-159 tandem
Sed04g3089 Sed-Chr4:41882846 Sed05g3510 Sed-Chr5:43766552 2.00E-117 transposed
Sed01g0661 Sed-Chr1:4862227 Sed05g3510 Sed-Chr5:43766552 4.30E-208 wgd
Sed04g3837 Sed-Chr4:46784349 Sed05g3510 Sed-Chr5:43766552 3.90E-177 wgd
Sed05g2248 Sed-Chr5:35186638 Sed05g3510 Sed-Chr5:43766552 5.00E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3510 - - - 0.0