Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3511 ATGTCAGTGGATGTCATACGAAAGGCCTTTCAAGCTACCGAAGAGGGGATCATTGCTCTAGTTTCGAAACAATGGTCGATGAGGCCACAAATTGCATCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGGTGGAACCCTTTACATTGCGAACGCTGGTGACTCGCGAGCCGTTTTAGGGAGAGTTGTAAAGGCGACAGGACAAGTTTTGTCTGTCCAGTTGTCGGCTGAGCATAATGCATCTATAGAATCTGTAAGGCAGGAGCTTCGTGCGTTGCATCCTGATGACCCACAAATTGTAGTTTTGAAACATAATGTATGGCGTGTGAAGGGCATTATTCAGGTTTCTCGATCAATCGGAGATGTCTATTTGAAGAGAGCTGAATTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGCGATCCTATCAAAAAACCCATTTTGAGCGCTGAACCAACTACTTCAGTGCTCCAATTACAGCCACAAGATCAGTTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAAGAAGCTGTTGATATTGTCCAAAACCATCCACGTAGTGGGAGTGCAAGGAGGCTGGTGAAAGAAGCACTACAAGAAGCAGCAAAGAAGAGAGAAATGAGGTACTCCGATTTGAAGAAGATTGACCGTGGCATACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCAAATCTTGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCATGCGAGGGGGCGGAGTTAACTTGCGTCCAAACTCATTGGCCCCTTGCACCACACCATCAGACACGGGCATGGCCTTATTATAG 858 46.27 MSVDVIRKAFQATEEGIIALVSKQWSMRPQIASVGSCCLVGVICGGTLYIANAGDSRAVLGRVVKATGQVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGIIQVSRSIGDVYLKRAEFNREPLYAKFRLRDPIKKPILSAEPTTSVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRSGSARRLVKEALQEAAKKREMRYSDLKKIDRGIRRHFHDDITVIVVFLDSNLVSRASSTKCASLSMRGGGVNLRPNSLAPCTTPSDTGMALL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43766552 43770435 + Sed0012682.2 Sed05g3511 716137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3511 285 SMART PP2C_4 1 239 IPR001932 -
Sed05g3511 285 Pfam Protein phosphatase 2C 4 210 IPR001932 -
Sed05g3511 285 PANTHER PROTEIN PHOSPHATASE 4 240 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g3511 285 ProSiteProfiles PPM-type phosphatase domain profile. 1 241 IPR001932 -
Sed05g3511 285 SUPERFAMILY PP2C-like 3 242 IPR036457 -
Sed05g3511 285 CDD PP2Cc 4 241 IPR001932 -
Sed05g3511 285 Gene3D - 2 253 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3511 Sed-Chr5:43766552 Sed10g1033 Sed-Chr10:9117671 6.00E-119 dispersed
Sed05g3510 Sed-Chr5:43766552 Sed05g3511 Sed-Chr5:43766552 3.70E-159 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3511 - - - 0.0