Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3519 ATGGACTTCTCTCTCAAGTCCTTCAAATCCAATGGCTCTTACAAGTTCGTGAAGAAGCTTTCTGGAACTGGCGCTGCTCTGGATCACGAACACCTTCCCATTCTTTCCGATCACCCGAACATGGCGGCGAACGGCCAATCTGGCCGGAGAGAGGTCGTCGTCAAGATCGACCAGCCTGACTCCGGCGGGAGGATTTGGCGGGAGCCGAGCTGTGATTTCTGGAAGGACGGCGGCGCTAATGGAGACGAGTTTGAGTTCCGGCGGGAACGGAAGGATGTGGAGGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCCGGAGAGATTTCGTTGGATATGGATATGGAAATGTTGGAGTCGCCACTGCATAAGACTCTGCCTCCCTTGGCGGAATCTCCTGTCCAACCGAGCCCCAAAGATATGAAGGTTTCGTTCGAGTCGGTTTCGGAGAATGATTCGATTCGAAGACGGTATAGAGACTCTCCGGTCGCGGCTGATGATGAACATAGAGGAGGACAGCAACAGCAGCAGTGTGATCGTCGAGCTTACGGTAAGGTTCATGACGATGGCGGCGATGAGGTTGTTCGATGTACATCTAATTCGTCGTTTCAGAAGAAATCTAGCTTGCTTGGGGCTAAAAATAAGTCCAGATTGTTGGACCCGCCTTCGCAGCCCGACCGGAGGTCCGGGCGGGTGCTGAAATCAGGGCAAGTACCGAAATCAGGGCAAATGCGGTCGGGAATGATGTCGAAACCGTTGGATGAAGAAGAGGACGATCCATTCTGGGAAGAGGATCTTCCTGATGAGTATAAGAAGGCTAATCTTGGTGTTCTAACTCTGTTGCAATGGGCGAGTTTGGTTTTGATAATTGCAGCATTGGTTTGCAGTTTGACAATTGGTTACTTGAGGAAGAAGAAGCTATGGAATCTTGAGCTATGGAAATGGGAGGTAATGGTTTTAGTTTTGATTTGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATTGTGTTCTTCATTGAAAGAAACTTTCTACTTCGTAAAAGGGTTCTTTATTTCGTTTATGGGGTTAGAAAGGCCGTTCAGAATTGTCTTTGGTTGGGTCTGGTCTTAATTGCTTGGAACTTTCTGTTCAATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCTCTTGAGTATGTCACCAAAGTTCTTGTATGTCTTTTAGTAAGCACTTTAGTTTGGCTGGTGAAAACGCTGATGGTGAAGGTTTTGGCCTCTTCATTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCACTGTTTAATCAATATGTAATCGAGACACTATCGGGGCCGCCGTTGATAGAGATTCGAAAGAACGAGGAAGAAGAAGAGCGACTTGTTGAAGAGGTTATGAAGTTGCAGAATGCAGGGGCTACCATTCCCCCTGATCTGAAGGCAACTGCCTTTCCAACTCAAAAGGGTGGGCGAGTTATTGGGAGTGGGGGGCTGCAGAAAAGTCCTCGTGGACGAAGCGCGAAGCTCTCGCGGGCGCTGTCGAAAAAGGGGGATGAGGGTATTACAATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTTCGACATGGGGCTCTTTCAACTTTGGATGAACAGATAAAGGATTCAACTCATGAGGAGGATGAATCAGCCACACAGATCAGGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCAGAACGTGGCTAGGCATGGTTCTAAATTCATCTATCTAGAGGACTTGATGCGTTTCATGCCAGAAGATGAAGCTTTAAAAACCACGAATCTCTTTGAAGGAGCATCTGAGTGCAGGAAAATAAGCAAATCATCTTTGAAAAACTGGGTGGTCAACGCCTTTAGAGAAAGGAGGGCCCTAGCTTTGACCCTGAACGATACTAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATAGTTTAGTTTGTATAGTTATTCTGGTTATTTGGCTACTCATTCTGGGTATTGCCACCAGCAAATTTCTCCTATTCCTTTCCTCTCAACTTGTCCTAGTTGCATTTGTATTTGGAAATACTTGCAAGACTGTGTTTGAAGCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTTGGCGATCGATGCGAAATCGATGGCGTGCAGATGATTGTAGAAGAAATGAACATTCTGACGACCATTTTTCTAAGATACGACAGCCAGAAGATCATATTTCCGAACAGTGTTCTAGCAACAAAGGCCATTCACAACTACTACCGCAGTCCCAACATGGGCGATGCCATAGAATTTTGTCTTCACATATCTACTCCACCTGAGAAAATTGCAGTCATGAGACAGAGAATAGTAAGTTTCATTGAGAGCAAACATGAGCATTGGTGTCCGGCGCCAACGATTATCCTCAAGGATGTGGAAGAGTTAAATAGGATGAGAATAGCCATATGGCCTACTCATAGAATGAACCATCAAGACATGGGAGAGAGGTGGGCAAGGAGAGCCCTCTTGGTTGAAGAACTGGTTAAAATTTTCCAAGAGCTTGACCTTCCATACCGTTTGCTACCGCTCGATATCAACGTCCGTTCCTTGCCTCCGGTGAACTCTACCAGACTTCCAGCTACTTGGACAGCCACTGCAAGTTGA 2712 45.83 MDFSLKSFKSNGSYKFVKKLSGTGAALDHEHLPILSDHPNMAANGQSGRREVVVKIDQPDSGGRIWREPSCDFWKDGGANGDEFEFRRERKDVEDPPSKLIGQFLHKQKASGEISLDMDMEMLESPLHKTLPPLAESPVQPSPKDMKVSFESVSENDSIRRRYRDSPVAADDEHRGGQQQQQCDRRAYGKVHDDGGDEVVRCTSNSSFQKKSSLLGAKNKSRLLDPPSQPDRRSGRVLKSGQVPKSGQMRSGMMSKPLDEEEDDPFWEEDLPDEYKKANLGVLTLLQWASLVLIIAALVCSLTIGYLRKKKLWNLELWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFNDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIRKNEEEEERLVEEVMKLQNAGATIPPDLKATAFPTQKGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIRSEYEAKVAAKKIFQNVARHGSKFIYLEDLMRFMPEDEALKTTNLFEGASECRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNSLVCIVILVIWLLILGIATSKFLLFLSSQLVLVAFVFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDSQKIIFPNSVLATKAIHNYYRSPNMGDAIEFCLHISTPPEKIAVMRQRIVSFIESKHEHWCPAPTIILKDVEELNRMRIAIWPTHRMNHQDMGERWARRALLVEELVKIFQELDLPYRLLPLDINVRSLPPVNSTRLPATWTATAS 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43835163 43839366 - Sed0024811.1 Sed05g3519 716145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3519 903 MobiDBLite consensus disorder prediction 150 191 - -
Sed05g3519 903 Gene3D - 727 776 IPR023408 -
Sed05g3519 903 FunFam Predicted mechanosensitive ion channel 727 776 - -
Sed05g3519 903 PIRSF Memb_At2g17000 33 903 IPR016688 -
Sed05g3519 903 MobiDBLite consensus disorder prediction 129 191 - -
Sed05g3519 903 Coils Coil 457 477 - -
Sed05g3519 903 Pfam Mechanosensitive ion channel, beta-domain 720 777 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g3519 903 MobiDBLite consensus disorder prediction 215 263 - -
Sed05g3519 903 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 900 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Sed05g3519 903 SUPERFAMILY Sm-like ribonucleoproteins 717 776 IPR010920 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2203 Sed-Chr5:34836664 Sed05g3519 Sed-Chr5:43835163 4.50E-301 dispersed
Sed05g3519 Sed-Chr5:43835163 Sed08g0903 Sed-Chr8:7551552 1.10E-150 dispersed
Sed05g3519 Sed-Chr5:43835163 Sed05g3520 Sed-Chr5:43835163 0.00E+00 tandem
Sed01g2461 Sed-Chr1:18343444 Sed05g3519 Sed-Chr5:43835163 1.10E-179 transposed
Sed01g0647 Sed-Chr1:4727690 Sed05g3519 Sed-Chr5:43835163 0.00E+00 wgd
Sed04g3825 Sed-Chr4:46705640 Sed05g3519 Sed-Chr5:43835163 1.60E-290 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3519 K22048 - csv:101210264 1405.96