Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3520 ATGGACTTCTCTCTCAAGTCCTTCAAATCCAATGGCTCTTACAAGTTCGTGAAGAAGCTTTCTGGAACTGGCGCTGCTCTGGATCACGAACACCTTCCCATTCTTTCCGATCACCCGAACATGGCGGCGAACGGCCAATCTGGCCGGAGAGAGGTCGTCGTCAAGATCGACCAGCCTGACTCCGGCGGGAGGATTTGGCGGGAGCCGAGCTGTGATTTCTGGAAGGACGGCGGCGCTAATGGAGACGAGTTTGAGTTCCGGCGGGAACGGAAGGATGTGGAGGATCCGCCGTCGAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCCGGAGAGATTTCGTTGGATATGGATATGGAAATGTTGGAGTCGCCACTGCATAAGACTCTGCCTCCCTTGGCGGAATCTCCTGTCCAACCGAGCCCCAAAGATATGAAGGTTTCGTTCGAGTCGGTTTCGGAGAATGATTCGATTCGAAGACGGTATAGAGACTCTCCGGTCGCGGCTGATGATGAACATAGAGGAGGACAGCAACAGCAGCAGTGTGATCGTCGAGCTTACGGTAAGGTTCATGACGATGGCGGCGATGAGGTTGTTCGATGTACATCTAATTCGTCGTTTCAGAAGAAATCTAGCTTGCTTGGGGCTAAAAATAAGTCCAGATTGTTGGACCCGCCTTCGCAGCCCGACCGGAGGTCCGGGCGGGTGCTGAAATCAGGGCAAGTACCGAAATCAGGGCAAATGCGGTCGGGAATGATGTCGAAACCGTTGGATGAAGAAGAGGACGATCCATTCTGGGAAGAGGATCTTCCTGATGAGTATAAGAAGGCTAATCTTGGTGTTCTAACTCTGTTGCAATGGGCGAGTTTGGTTTTGATAATTGCAGCATTGGTTTGCAGTTTGACAATTGGTTACTTGAGGAAGAAGAAGCTATGGAATCTTGAGCTATGGAAATGGGAGGTAATGGTTTTAGTTTTGATTTGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGATAATTGTGTTCTTCATTGAAAGAAACTTTCTACTTCGTAAAAGGGTTCTTTATTTCGTTTATGGGGTTAGAAAGGCCGTTCAGAATTGTCTTTGGTTGGGTCTGGTCTTAATTGCTTGGAACTTTCTGTTCAATGACAAAGTTCAAAGAGAAGTCAAAAGCAATGCTCTTGAGTATGTCACCAAAGTTCTTGTATGTCTTTTAGTAAGCACTTTAGTTTGGCTGGTGAAAACGCTGATGGTGAAGGTTTTGGCCTCTTCATTCCATGTGAGTACATATTTTGATAGGATTCAGGATGCACTGTTTAATCAATATGTAATCGAGACACTATCGGGGCCGCCGTTGATAGAGATTCGAAAGAACGAGGAAGAAGAAGAGCGACTTGTTGAAGAGGTTATGAAGTTGCAGAATGCAGGGGCTACCATTCCCCCTGATCTGAAGGCAACTGCCTTTCCAACTCAAAAGGGTGGGCGAGTTATTGGGAGTGGGGGGCTGCAGAAAAGTCCTCGTGGACGAAGCGCGAAGCTCTCGCGGGCGCTGTCGAAAAAGGGGGATGAGGGTATTACAATTGATCACTTGCATAGGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAACATTGTTCGACATGGGGCTCTTTCAACTTTGGATGAACAGATAAAGGATTCAACTCATGAGGAGGATGAATCAGCCACACAGATCAGGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCAGAACGTGGCTAGGCATGGTTCTAAATTCATCTATCTAGAGGACTTGATGCGTTTCATGCCAGAAGATGAAGCTTTAAAAACCACGAATCTCTTTGAAGGAGCATCTGAGTGCAGGAAAATAAGCAAATCATCTTTGAAAAACTGGGTGGTAAGAGCTATGCTATCAAAATCTAAATGTATTTATGCTCCGACTCGGCATGTTTAA 1983 46.5 MDFSLKSFKSNGSYKFVKKLSGTGAALDHEHLPILSDHPNMAANGQSGRREVVVKIDQPDSGGRIWREPSCDFWKDGGANGDEFEFRRERKDVEDPPSKLIGQFLHKQKASGEISLDMDMEMLESPLHKTLPPLAESPVQPSPKDMKVSFESVSENDSIRRRYRDSPVAADDEHRGGQQQQQCDRRAYGKVHDDGGDEVVRCTSNSSFQKKSSLLGAKNKSRLLDPPSQPDRRSGRVLKSGQVPKSGQMRSGMMSKPLDEEEDDPFWEEDLPDEYKKANLGVLTLLQWASLVLIIAALVCSLTIGYLRKKKLWNLELWKWEVMVLVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFNDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIRKNEEEEERLVEEVMKLQNAGATIPPDLKATAFPTQKGGRVIGSGGLQKSPRGRSAKLSRALSKKGDEGITIDHLHRLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDSTHEEDESATQIRSEYEAKVAAKKIFQNVARHGSKFIYLEDLMRFMPEDEALKTTNLFEGASECRKISKSSLKNWVVRAMLSKSKCIYAPTRHV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43835163 43839366 - Sed0024811.2 Sed05g3520 716146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3520 660 MobiDBLite consensus disorder prediction 150 191 - -
Sed05g3520 660 MobiDBLite consensus disorder prediction 129 191 - -
Sed05g3520 660 Coils Coil 457 477 - -
Sed05g3520 660 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 35 646 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Sed05g3520 660 MobiDBLite consensus disorder prediction 215 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3825 Sed-Chr4:46705640 Sed05g3520 Sed-Chr5:43835163 1.80E-185 dispersed
Sed05g3520 Sed-Chr5:43835163 Sed12g1723 Sed-Chr12:28408983 5.30E-70 dispersed
Sed05g3519 Sed-Chr5:43835163 Sed05g3520 Sed-Chr5:43835163 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3520 K22048 - csv:101210264 959.518