Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3534 ATGGCTACTTACTATAGTTCGAATAACGAAAGGGAGGCTACTCCTATCCTCTACTCGAGGGGAGCTTTGATTGGTTCGTATGAAGAAACGTCAGTTCTTCCGAGGAATATGATGATGCATGTTAATTCTGGGACATACATGACTTCATTGCCTTCACAAGGGCACAATGGTTGTGGTCAGATTACGTCGGTTGGAGCCGCGGGAACCACCCAACAGCAGCAAGAGTTTTTATCCAATCTTGGCGGTTCGCAAATTGCTGAGCACGATTTCAATGCATGGAGAGAGGAAAGGAGTGAAATGCTCGGCATGAGCTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGATTGTCCCTTACTCTCAGTACACAAATCCCATCTGGAATCCAAATGCCATCAATTCCATATAGGAATTTGGATACGGGTTTAACTTCACTCTTGAGTCCTAATTCTACGAATTCAGGTGAGGAAGGCTGCAGAAATGGCGCTTCTCGAGACGAGCAGTTGAGAAATGGAGAAAACTTGCCGCCTAATTTCCAAGAATTTGCGAAGGGCGAATTATCTCAGTATAGTATGTCTACTATTGCAAGAGCTATGCCGAATTCGAAGTACCTTAAGGCAGCACAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACACGAGCATGAACCTAAAAGTGCGAGGAATGGTGATACAGGAACCAAAAATGACAGTTCGATGCTTACTGCGAGTGGATCATCTTCGAACCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCACATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAATATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTAATAGCAGGATGTGGGGCATCCAAGCCATATACTGCACTTGCACTCCAGACTATATCACGTCATTTTCGATGCTTGCGTGATGCAATATCTGGTCAAGTTACAGCTACCCGTAAAAGCCTGGGGGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACCCGTCTCCGATACGTGGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAACAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGATTGCCTGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGGCAGACAGGCTTGACTAGGAGTCAGGTCTCTAATTGGTTTATCAATGCTCGTGTGCGTCTTTGGAAACCTATGGTAGAGGATATGTACAAGGAAGAGACAGGCAGTGCAGAAATGGACTCTATATCGTCATCTGAAAATGCTGGCAAGGCATCAAAAGGAGATAACAGGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGAAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGATGTTATCGACTTAAAATCTGATCAAGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGTTAGTTTCCAAAATGGCGGTCACATCGAAGCCCAAAACGAGTTGGTGAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCATGATGCGATGGTTCGCTCTCAGCCAGAGAGTGACAGGTTTATGGCTGCCTATCACATGTCTGAACTGGGAAGGTTCGGTGCTGTTAGCGGGGTATCGCTTACGCTGGGTCTGCAGCATTGTGAGGAGGGTGGCATACCGATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGGAATGTACAATCCCGCAGCACCTTCTCTCGAGGAAACCATGCATTTTGAATGCGATGCTGGTAGTAGTCCACAACCGAGGTTCGGACCTTCTCATCTTTATCATGATTTTGTTGTGTAA 2034 45.38 MATYYSSNNEREATPILYSRGALIGSYEETSVLPRNMMMHVNSGTYMTSLPSQGHNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNAWREERSEMLGMSSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNLDTGLTSLLSPNSTNSGEEGCRNGASRDEQLRNGENLPPNFQEFAKGELSQYSMSTIARAMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHEPKSARNGDTGTKNDSSMLTASGSSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAISGQVTATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEDMYKEETGSAEMDSISSSENAGKASKGDNRTFEDDKEEDLQQSESSTATERCSAGDVIDLKSDQASNLGNSGSTRLVSFQNGGHIEAQNELVKSREELRPNVNNSNFFHDAMVRSQPESDRFMAAYHMSELGRFGAVSGVSLTLGLQHCEEGGIPMPAGTHHGFAAMRGDGMYNPAAPSLEETMHFECDAGSSPQPRFGPSHLYHDFVV 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43959941 43965275 - Sed0007173.1 Sed05g3534 716160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3534 677 Pfam Associated with HOX 207 354 IPR006563 -
Sed05g3534 677 Coils Coil 287 307 - -
Sed05g3534 677 FunFam BEL1-like homeodomain protein 4 408 470 - -
Sed05g3534 677 CDD homeodomain 405 466 IPR001356 GO:0003677(InterPro)
Sed05g3534 677 SUPERFAMILY Homeodomain-like 406 472 IPR009057 -
Sed05g3534 677 SMART HOX_1 405 469 IPR001356 GO:0003677(InterPro)
Sed05g3534 677 MobiDBLite consensus disorder prediction 494 512 - -
Sed05g3534 677 MobiDBLite consensus disorder prediction 252 285 - -
Sed05g3534 677 MobiDBLite consensus disorder prediction 474 524 - -
Sed05g3534 677 MobiDBLite consensus disorder prediction 153 186 - -
Sed05g3534 677 SMART prehox3 200 355 IPR006563 -
Sed05g3534 677 MobiDBLite consensus disorder prediction 230 251 - -
Sed05g3534 677 Gene3D - 400 479 - -
Sed05g3534 677 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 145 506 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g3534 677 MobiDBLite consensus disorder prediction 478 493 - -
Sed05g3534 677 Pfam Homeobox KN domain 422 461 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed05g3534 677 ProSiteProfiles 'Homeobox' domain profile. 402 465 IPR001356 GO:0003677(InterPro)
Sed05g3534 677 MobiDBLite consensus disorder prediction 230 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3534 Sed-Chr5:43959941 Sed07g0787 Sed-Chr7:5833243 5.30E-89 dispersed
Sed01g0277 Sed-Chr1:2137265 Sed05g3534 Sed-Chr5:43959941 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38738 PF07526 POX 4.00E-51 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3534 - - - 0.0