Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3534 | ATGGCTACTTACTATAGTTCGAATAACGAAAGGGAGGCTACTCCTATCCTCTACTCGAGGGGAGCTTTGATTGGTTCGTATGAAGAAACGTCAGTTCTTCCGAGGAATATGATGATGCATGTTAATTCTGGGACATACATGACTTCATTGCCTTCACAAGGGCACAATGGTTGTGGTCAGATTACGTCGGTTGGAGCCGCGGGAACCACCCAACAGCAGCAAGAGTTTTTATCCAATCTTGGCGGTTCGCAAATTGCTGAGCACGATTTCAATGCATGGAGAGAGGAAAGGAGTGAAATGCTCGGCATGAGCTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGATTGTCCCTTACTCTCAGTACACAAATCCCATCTGGAATCCAAATGCCATCAATTCCATATAGGAATTTGGATACGGGTTTAACTTCACTCTTGAGTCCTAATTCTACGAATTCAGGTGAGGAAGGCTGCAGAAATGGCGCTTCTCGAGACGAGCAGTTGAGAAATGGAGAAAACTTGCCGCCTAATTTCCAAGAATTTGCGAAGGGCGAATTATCTCAGTATAGTATGTCTACTATTGCAAGAGCTATGCCGAATTCGAAGTACCTTAAGGCAGCACAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGTTCACACGAGCATGAACCTAAAAGTGCGAGGAATGGTGATACAGGAACCAAAAATGACAGTTCGATGCTTACTGCGAGTGGATCATCTTCGAACCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCACATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAATATTATCATCAGATGCAGATTGTGGTGTCATCATTTGATGTAATAGCAGGATGTGGGGCATCCAAGCCATATACTGCACTTGCACTCCAGACTATATCACGTCATTTTCGATGCTTGCGTGATGCAATATCTGGTCAAGTTACAGCTACCCGTAAAAGCCTGGGGGAGCATGAAAATTCTGGAAATGACAAAGGAGTTGGAATCACCCGTCTCCGATACGTGGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAACAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGATTGCCTGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGGCAGACAGGCTTGACTAGGAGTCAGGTCTCTAATTGGTTTATCAATGCTCGTGTGCGTCTTTGGAAACCTATGGTAGAGGATATGTACAAGGAAGAGACAGGCAGTGCAGAAATGGACTCTATATCGTCATCTGAAAATGCTGGCAAGGCATCAAAAGGAGATAACAGGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGAAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGATGTTATCGACTTAAAATCTGATCAAGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGTTAGTTTCCAAAATGGCGGTCACATCGAAGCCCAAAACGAGTTGGTGAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCATGATGCGATGGTTCGCTCTCAGCCAGAGAGTGACAGGTTTATGGCTGCCTATCACATGTCTGAACTGGGAAGGTTCGGTGCTGTTAGCGGGGTATCGCTTACGCTGGGTCTGCAGCATTGTGAGGAGGGTGGCATACCGATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGGAATGTACAATCCCGCAGCACCTTCTCTCGAGGAAACCATGCATTTTGAATGCGATGCTGGTAGTAGTCCACAACCGAGGTTCGGACCTTCTCATCTTTATCATGATTTTGTTGTGTAA | 2034 | 45.38 | MATYYSSNNEREATPILYSRGALIGSYEETSVLPRNMMMHVNSGTYMTSLPSQGHNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNAWREERSEMLGMSSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNLDTGLTSLLSPNSTNSGEEGCRNGASRDEQLRNGENLPPNFQEFAKGELSQYSMSTIARAMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHEPKSARNGDTGTKNDSSMLTASGSSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAISGQVTATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEDMYKEETGSAEMDSISSSENAGKASKGDNRTFEDDKEEDLQQSESSTATERCSAGDVIDLKSDQASNLGNSGSTRLVSFQNGGHIEAQNELVKSREELRPNVNNSNFFHDAMVRSQPESDRFMAAYHMSELGRFGAVSGVSLTLGLQHCEEGGIPMPAGTHHGFAAMRGDGMYNPAAPSLEETMHFECDAGSSPQPRFGPSHLYHDFVV | 677 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 43959941 | 43965275 | - | Sed0007173.1 | Sed05g3534 | 716160 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3534 | 677 | Pfam | Associated with HOX | 207 | 354 | IPR006563 | - | |
Sed05g3534 | 677 | Coils | Coil | 287 | 307 | - | - | |
Sed05g3534 | 677 | FunFam | BEL1-like homeodomain protein 4 | 408 | 470 | - | - | |
Sed05g3534 | 677 | CDD | homeodomain | 405 | 466 | IPR001356 | GO:0003677(InterPro) | |
Sed05g3534 | 677 | SUPERFAMILY | Homeodomain-like | 406 | 472 | IPR009057 | - | |
Sed05g3534 | 677 | SMART | HOX_1 | 405 | 469 | IPR001356 | GO:0003677(InterPro) | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 494 | 512 | - | - | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 252 | 285 | - | - | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 474 | 524 | - | - | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 153 | 186 | - | - | |
Sed05g3534 | 677 | SMART | prehox3 | 200 | 355 | IPR006563 | - | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 230 | 251 | - | - | |
Sed05g3534 | 677 | Gene3D | - | 400 | 479 | - | - | |
Sed05g3534 | 677 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 145 | 506 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 478 | 493 | - | - | |
Sed05g3534 | 677 | Pfam | Homeobox KN domain | 422 | 461 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed05g3534 | 677 | ProSiteProfiles | 'Homeobox' domain profile. | 402 | 465 | IPR001356 | GO:0003677(InterPro) | |
Sed05g3534 | 677 | MobiDBLite | consensus disorder prediction | 230 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g3534 | Sed-Chr5:43959941 | Sed07g0787 | Sed-Chr7:5833243 | 5.30E-89 | dispersed | |
Sed01g0277 | Sed-Chr1:2137265 | Sed05g3534 | Sed-Chr5:43959941 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38738 | PF07526 | POX | 4.00E-51 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3534 | - | - | - | 0.0 |