Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3536 ATGGCGGAGCAAAGGATCGCTGATAGAAGCTCAAAGAACGAAGGAGGAGAGGTGGAGAAGAAGAAACAGAACAGAAATGTGGATCTAGAAATTCTCAGCCTCTTGCTCCAACCTATGACTATCGGCGATGATCCGGATTATGTCGGCATTCGTCGTCTCTTGCTCTATCGGAAATCTAAAGCCGAGATTCTTCGTCGTAGAGACTGGAAGTGCAATGGAAAAGGTTATGTGGCATTCCGCAATTTCATTCACCGGCCAAGGAATTGGGAAAGCTCGCATTTACCAAGTCGTCAAAGCACCCCTGAAAACAGTGGAAGATGGGTTCCTCCTCTAAGTCATCTCTCTCTCTTGCATGAGGTGGAGAGCTGGAGTTCTAGCAAGGACCTTCAAAGTTACCGAAGATCAAGTTTTAGCTCAAGTGCAAGTGAAATTGGTCTACATACTCGTAAAGTTGAACTTGCATATTCTTTTGTAGGAATGCATTGTATATTCGATCAATGCAAAACAGCTGTTACGGTTGTGAAGTTTGGGCACATGAGCTCTGATGTATTAGCATATGGGGCATCAGATGGGACCTTAACTGTATGCAATGTTTCTGAACCATCTTCAACCGTCAAGCAATTGCTGGGCCATTCAAAAGACGTCACAGACTTCGATTTTTCATCAAATAATCAGTACATTGCATCATCATCAAAGGATAAAACCGTTAGAGTATGGGAGATATCAAAACAACTTTGCATTAGAGTAATCTATGGAGTATCTTCACAATTGTGTATACGTTTTCATCCGGTAAATAACAACTTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGTTTAATTTCAGCACTGGCAGGATTATGACAAAATTAGTTCTTAATGGTGAGGCTACCTCCATGGACCATGATCACACCGGTCAGCTCCTTTTCTGTGGAGACGCAAATGGATATGTTTACTCTGTGAGCATGAACTCTCGTACAGGAGCATTATCCCGTTCTCACCGCCAGTGGTGTAGTAGTCGGCGAAAATCTCCTGTATCTACTGTACAATATCGAAGCTTCTCTCTTCTGGCGAGGGGCCCTGTATTGCTGACTTGCACACAAGATGGGAACTTGTCTTTCTTCAGTGTTGCTTTGGATGCTCAAGGATATTTGACCCTCCGTTGCTCACTCAAATTAGCTCCAAGGTCACATAGCATCCATGCTTCGTTCTGCCCCCTACTCTCCCTTGAAAAAGGAGAGTACATTGTCGCAGGAAGTGAGGATTCAAATGTCTACTTCTATGATTTGACACGACCTAAACATACTTGTGTCAACAAGCTACAGGGCCATCAGTTTCCAGTCATTGGAGTTGCCTGGAACCATGGGGATAATTTGTTGGCTTCGTCAGATTTTAGTGGCACAGTAATTGTATGGAAGAGATCAAAGCATCTCAGAGCACGTGCTCTATTTCTTTTTAGCCCATTAGTTTTAGAAAAGAAGTGA 1488 43.28 MAEQRIADRSSKNEGGEVEKKKQNRNVDLEILSLLLQPMTIGDDPDYVGIRRLLLYRKSKAEILRRRDWKCNGKGYVAFRNFIHRPRNWESSHLPSRQSTPENSGRWVPPLSHLSLLHEVESWSSSKDLQSYRRSSFSSSASEIGLHTRKVELAYSFVGMHCIFDQCKTAVTVVKFGHMSSDVLAYGASDGTLTVCNVSEPSSTVKQLLGHSKDVTDFDFSSNNQYIASSSKDKTVRVWEISKQLCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIMTKLVLNGEATSMDHDHTGQLLFCGDANGYVYSVSMNSRTGALSRSHRQWCSSRRKSPVSTVQYRSFSLLARGPVLLTCTQDGNLSFFSVALDAQGYLTLRCSLKLAPRSHSIHASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHQFPVIGVAWNHGDNLLASSDFSGTVIVWKRSKHLRARALFLFSPLVLEKK 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 43985812 43993507 - Sed0016950.1 Sed05g3536 716162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3536 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 242 - -
Sed05g3536 495 MobiDBLite consensus disorder prediction 1 21 - -
Sed05g3536 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 474 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 Gene3D - 403 486 IPR015943 GO:0005515(InterPro)
Sed05g3536 495 Gene3D - 160 391 IPR015943 GO:0005515(InterPro)
Sed05g3536 495 PANTHER WD REPEAT PROTEIN 26-RELATED 149 477 IPR051350 GO:0005634(PANTHER)|GO:1990841(PANTHER)
Sed05g3536 495 SUPERFAMILY WD40 repeat-like 169 476 IPR036322 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 285 323 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 435 474 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 398 430 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 201 240 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 156 197 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 343 377 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 SMART WD40_4 243 282 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Sed05g3536 495 Pfam WD domain, G-beta repeat 204 239 IPR001680 GO:0005515(InterPro)
Sed05g3536 495 Pfam WD domain, G-beta repeat 437 473 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3536 K24739 - - csv:101204649 825.469
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3536 Sed-Chr5:43985812 Sed14g0783 Sed-Chr14:13197753 1.20E-10 dispersed
Sed05g3536 Sed-Chr5:43985812 Sed05g0394 Sed-Chr5:2697978 1.70E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32