Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3539 ATGAAGATCCTTTGTGATGTTTGCAACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGCGACCGCCGCGTCCACCGCGCCAACAAGCTCGCCGGAAAACACACCCGCTTCTCCCTCCTCCGATCGGCCGCCGCCGCCACTTCGCCGCCGTTGTGCGATATCTGCCAGCTCCGGCGAGCTTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCGATCCACGCCGCCAACGAACACACCAAAAACCACTGCCGGTTCCTTCTCACCGGAGTCAAGATCTCGCCGTCGCTCGCCGCCCCTTCGGCCGCCGTCCACGGCGGCGATAAGGTTTCAGAGGAGAATGAAATTGGGGTTTTGAAGAGGGCGAAAATGGAGGATTTGCAGGCGTCGATAGTTGAAGAAAGTGGAATTAAAAATAATGGGGTTTCGTTTTCCATTTCTGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTTGAGGAATTTCTTGATTCTTCATGTCCTGCTGATGTTTTCTGTTAA 561 54.01 MKILCDVCNKEEASVFCPSDEAALCAACDRRVHRANKLAGKHTRFSLLRSAAAATSPPLCDICQLRRAFLFCREDRAILCRECDIPIHAANEHTKNHCRFLLTGVKISPSLAAPSAAVHGGDKVSEENEIGVLKRAKMEDLQASIVEESGIKNNGVSFSISEYLESLPGWCVEEFLDSSCPADVFC 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44017457 44018017 + Sed0010735.1 Sed05g3539 716165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3539 186 Gene3D Classic Zinc Finger 1 101 - -
Sed05g3539 186 FunFam B-box zinc finger protein 21 1 100 - -
Sed05g3539 186 SMART bboxneu5 55 102 IPR000315 GO:0008270(InterPro)
Sed05g3539 186 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed05g3539 186 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Sed05g3539 186 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270(InterPro)
Sed05g3539 186 CDD Bbox1_BBX-like 59 102 IPR049808 -
Sed05g3539 186 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270(InterPro)
Sed05g3539 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
Sed05g3539 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed05g3539 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 180 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1716 Sed-Chr3:11151192 Sed05g3539 Sed-Chr5:44017457 1.50E-43 dispersed
Sed05g3539 Sed-Chr5:44017457 Sed11g1069 Sed-Chr11:26168050 7.80E-43 dispersed
Sed01g2510 Sed-Chr1:18817266 Sed05g3539 Sed-Chr5:44017457 5.40E-31 wgd
Sed04g3907 Sed-Chr4:47225247 Sed05g3539 Sed-Chr5:44017457 2.90E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38739 PF00643 zf-B_box 2.60E-05 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3539 - - - 0.0