Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3557 ATGCCGGCCCTAGCGTATTGCGTTGAAGCCGCTGCAGCTCCTCCTCCCGGCTATGCTTTTGCTGGGGATAGCTCTCTTCCGTCGCCGGTCTTGTTTTTCGGCGGACCTCTGGAGACTATTACCTCTGAAAACCCCTCTTGGTCTCCTTCACTTTCGTCTTCCCTTTACAAGATCGATGGATGGGGTGCCCCTTATTTCTCTGTCAATTCCTCTGGGAATATGGCTGTTCGGCCCTACGGTTCCGCCACTTTGCCTCACCAGGAGATTGATCTCTTGAAAATTGTCAAGAAGGCTTCCGATCCGATTAGCTCCGGCGGCCTTGGTTTGCAGCTTCCTCTTGTTGTTCGCCTTCCCGATGTGCTTAAGAATCGCCTCGAGTCTCTCCAGTCTGCGTTTGATTACGCCATTCAATCTCTGGGTTATGGCTCTCATTACCAGGGCGTTTTTCCTGTTAAATGTAACCAGGATAGGTTTGTTGTTGAAGATATTGTGAAATTTGGGTCTCCGTTTCGGTTTGGGCTCGAGGCTGGGTCGAAACCGGAGCTTCTCCTGGCGATGAGCTGTTTGTGCAAAGGGAATAGAGATGCCCTTTTGGTGTGTAATGGTTTTAAGGATGCGGAGTATATTTCTTTGGCTCTTATGGCGAGGAAGCTCGCCTTGAATACGGTGATTGTGCTTGAACAAGAGGAAGAGCTTGATTTGGTTATTGATTTGAGCAAGAGGCTCTTTGTTCGTCCTGTGATTGGCATGCGTGCGAAGCTTAGAACCAAGCATTCTGGTCATTTTGGATCTACATCTGGCGAGAAAGGGAAATTTGGTCTTACGACCACTCAGATTCTTCGTGTGGTTAAGAAGCTTAAACAGGCTGATATGCTTGATTGCCTTCAGTTGCTACATTTTCATATTGGTTCCCAGATCCCTTCCACTGCCTTGCTCGCTGATGGGGTTGGTGAGGCTGCTCAGATCTATTGTGAATTGGTTCGTCTGGGTGCCAACATGCGAGTTATTGACATTGGAGGTGGTCTCGGCATTGACTATGACGGGTCGAAGTCTGGGGACTCTGAGTTATCGGTTGCTTATAGCCTTGAAGAGTATGCTTCTGCCGTTGTTGATGCTGTTCGCTGTGTATGCGACCGTAGGGCTGTTAACCATCCAATAATTTGCAGTGAAAGTGGCCGAGCAATTGTGTCTCATCACTCTGTTCTGATATTTGAGGCTGTTTCTGCTAGCACTTATGAAGCCCCATCCATGAACTCGCTTGAACTTCAGTATCTTATTGATGGGCTGACAGATGATGCTCGAATTGACTATCAGAACCTCTCGACTGCAGCTTACATGGGTGAGTACAAGACATGCTTGCTGTTTGCAGACCAATTGAAGCAACGCTGCGTTGAGAAATTTAAGGATGGGTGTTTGGGAATGGAACAGCTGGCTGCGGTTGATGGGCTTTGTGCCCTTGTTTCAAAGGCAGTTGGAGAGTTGGAATCTGTAAGTACGTACCATGTGAACCTCTCTGTTTTCACCTCGATTCCAGATTTCTGGGCTATTGATCAACTGTTTCCAATAATCCCTATTCATCGTCTTGATCAAAGACCTTCAGTGAAGGGAATTCTGTCTGATCTAACCTGTGATAGTGATGGGAAGATTGATAAGTTCATTGGTGGTGGCTCGAGCTTGCCGTTGCACGAGCTGGAAGGCAACGGGAATTTGTCGGGTGGAAGTGGGCGATACTATCTTGGGATGTTTCTGGGTGGGGCTTATGAGGAGGCTCTCGGTGGTTATCACAACCTGTTTGGTGGTCCGAGCGTGGTTCGGGTGATGCAGAGCGATGGACCGCAAAGCTTTGCGGTGACGCGCGCTGTGCCTGGGCCATCATGTGGGGATGTTCTCCGAGTGATGCAGCATGAGCCCGAGCTGATGTTCGAGACCCTCAAGCACCGAGCAGAGGAGTTTGTGCAGGATGATGATGGTGGTAGTGGGGTTTTAGGCATAGCCAATAGCTTGGCCATGTCGTTCCGCAACATGCCTTATTTGTCCAGTGAATTGCCCTTCTGCTGCAATGAAACTGAATACAATGGTGCTGTGGATTCCGGCGTCGGCGATGCCGAGCAGTGGACATACTGCTATGCTTGA 2133 49.18 MPALAYCVEAAAAPPPGYAFAGDSSLPSPVLFFGGPLETITSENPSWSPSLSSSLYKIDGWGAPYFSVNSSGNMAVRPYGSATLPHQEIDLLKIVKKASDPISSGGLGLQLPLVVRLPDVLKNRLESLQSAFDYAIQSLGYGSHYQGVFPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNRDALLVCNGFKDAEYISLALMARKLALNTVIVLEQEEELDLVIDLSKRLFVRPVIGMRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLKQADMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSGDSELSVAYSLEEYASAVVDAVRCVCDRRAVNHPIICSESGRAIVSHHSVLIFEAVSASTYEAPSMNSLELQYLIDGLTDDARIDYQNLSTAAYMGEYKTCLLFADQLKQRCVEKFKDGCLGMEQLAAVDGLCALVSKAVGELESVSTYHVNLSVFTSIPDFWAIDQLFPIIPIHRLDQRPSVKGILSDLTCDSDGKIDKFIGGGSSLPLHELEGNGNLSGGSGRYYLGMFLGGAYEEALGGYHNLFGGPSVVRVMQSDGPQSFAVTRAVPGPSCGDVLRVMQHEPELMFETLKHRAEEFVQDDDGGSGVLGIANSLAMSFRNMPYLSSELPFCCNETEYNGAVDSGVGDAEQWTYCYA 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44141000 44144635 - Sed0015136.1 Sed05g3557 716183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3557 710 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 330 343 IPR022657 -
Sed05g3557 710 FunFam Biosynthetic arginine decarboxylase 118 399 - -
Sed05g3557 710 PRINTS Arginine decarboxylase signature 141 155 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 585 606 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 249 271 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 503 524 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 528 553 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 199 214 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 377 394 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 117 132 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PRINTS Arginine decarboxylase signature 225 246 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 134 397 IPR022644 GO:0003824(InterPro)
Sed05g3557 710 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 149 167 IPR022653 -
Sed05g3557 710 NCBIfam arginine decarboxylase 47 679 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 56 608 IPR009006 GO:0003824(InterPro)
Sed05g3557 710 PANTHER ARGININE DECARBOXYLASE 1 681 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)|GO:0008792(PANTHER)
Sed05g3557 710 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 292 305 IPR000183 GO:0003824(InterPro)
Sed05g3557 710 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 173 185 IPR000183 GO:0003824(InterPro)
Sed05g3557 710 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 585 598 IPR000183 GO:0003824(InterPro)
Sed05g3557 710 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 149 167 IPR000183 GO:0003824(InterPro)
Sed05g3557 710 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 387 406 IPR000183 GO:0003824(InterPro)
Sed05g3557 710 SUPERFAMILY PLP-binding barrel 118 399 IPR029066 -
Sed05g3557 710 Gene3D Alanine racemase 118 399 IPR029066 -
Sed05g3557 710 Gene3D - 416 496 - -
Sed05g3557 710 CDD PLPDE_III_ADC 108 606 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
Sed05g3557 710 PIRSF ARGDC 36 680 IPR002985 GO:0006527(InterPro)|GO:0008295(InterPro)|GO:0008792(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3557 K01583 - - csv:101204085 1224.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43