Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3590 | ATGCCGCTTATTTCCGCTGCCAACGAACGCAACCGCAGCGAAGAAGAAGAAGAAGACGACGAAGAAGAATCTATGGCGGCAACTCCGTCACCGTGGGGCAAGCCCGGCGCCTGGGCTCTGGACTCCGAGGAGCACGAGGCCGAGCTTCTCAAGGACCTCCTCACCAACCAATCCCGCCCTAAATCCGACCCCGCCGGCGATTTCCCCTCCCTCTCCGCCGCCGCCGCCTCCAAGCCCAAGAGGAAGAAAGGTCAGTCCATTACCCTCTCCGAATTTCAGAATTATGGCGGTCCTAAGCCCTCCTCGGCTCATGTTGAGCCCAAGGGTCTCACGACGGAAGATCTGTTGCGCCTTCCCACCGGTCCGCGCCAGCGGACCGAGGAGGAGTTGGACCGGAACCGGCTCGGGGGTGGTTTCAGGAGTTGGGGCCAGAATAGTTCGTATGACAGGGGGAATCGGTATTCTAACGGTGAAGATTCGTCCAATTCTCGACGGGGTTCTAGGGGTTTTGATGAGGGCGACGATGGATCTAGTCGTGAATTTAGAAGGGAACCGTTGCCGTCTAGGGCTGATGAGATTGATGATTGGGGCGCTGGGAAGAAGCCTATGATGGGTAATGGATTCGAGAGGCGTGAGAGAGGAGGAGGAGGAGGAGGAGGAGGCTTTTTCGATTCGCATTCGTCGAAAGCAGACGAATCGGATAGCTGGGTTTCGAATAAGAGCTTTTCGCCTTCTGAGGGACGGAGATCAGGTGGTATTGGTGGATTTGATCGAGAGCGAAGAGGGGGATTTCCCTCAAACGGTGGCGGGGCGGATTCAGACAATTGGGGCCGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGATAATGGCGGTGGGATGGATTCAGATAACTGGGGCAAGAAATCTCAAGTGGCTAGAGGTGGAATTAGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGAGAATCAGGAGGCTTCAGGCACTGTAGTTAAGCCAAAGGGTTCCAATCCTTTTGGAAATGCAAGACCAAGGGAACAGGTATTGGCTGAGAAGGGGCAGGACTGGAAGAAGATTGATGAGCATCTTGATTCGATGAAAATTAAGGAAACGGCTGAGAGGGTTGAGAGAAGTGGGGCTTCGTTTGAGAGAAAAGGATTTGGGATTCGAAGTGGCCAGTCTCCTGAAGATCGGTCAGGGAGGAGTTGGAGGAGGCCTGAGTCTGGAAACTCGTCCTCAAAGTGGTGA | 1266 | 54.27 | MPLISAANERNRSEEEEEDDEEESMAATPSPWGKPGAWALDSEEHEAELLKDLLTNQSRPKSDPAGDFPSLSAAAASKPKRKKGQSITLSEFQNYGGPKPSSAHVEPKGLTTEDLLRLPTGPRQRTEEELDRNRLGGGFRSWGQNSSYDRGNRYSNGEDSSNSRRGSRGFDEGDDGSSREFRREPLPSRADEIDDWGAGKKPMMGNGFERRERGGGGGGGGFFDSHSSKADESDSWVSNKSFSPSEGRRSGGIGGFDRERRGGFPSNGGGADSDNWGRKSEGARGGIGDNGGGMDSDNWGKKSQVARGGISERPRLNLQPRSIPLNNENQEASGTVVKPKGSNPFGNARPREQVLAEKGQDWKKIDEHLDSMKIKETAERVERSGASFERKGFGIRSGQSPEDRSGRSWRRPESGNSSSKW | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 44371545 | 44374178 | + | Sed0007163.2 | Sed05g3590 | 716216 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3590 | 421 | Coils | Coil | 3 | 24 | - | - | |
Sed05g3590 | 421 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 25 | 412 | IPR010433 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro) | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 320 | 337 | - | - | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 378 | 421 | - | - | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 120 | 135 | - | - | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 139 | 163 | - | - | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 52 | 350 | - | - | |
Sed05g3590 | 421 | Pfam | Plant specific eukaryotic initiation factor 4B | 249 | 377 | IPR010433 | GO:0003743(InterPro) | |
Sed05g3590 | 421 | Pfam | Plant specific eukaryotic initiation factor 4B | 31 | 247 | IPR010433 | GO:0003743(InterPro) | |
Sed05g3590 | 421 | MobiDBLite | consensus disorder prediction | 164 | 198 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0217 | Sed-Chr1:1740413 | Sed05g3590 | Sed-Chr5:44371545 | 1.50E-109 | dispersed | |
Sed04g3861 | Sed-Chr4:46958214 | Sed05g3590 | Sed-Chr5:44371545 | 1.40E-86 | dispersed | |
Sed05g2231 | Sed-Chr5:35050580 | Sed05g3590 | Sed-Chr5:44371545 | 7.50E-69 | dispersed | |
Sed05g3589 | Sed-Chr5:44371545 | Sed05g3590 | Sed-Chr5:44371545 | 5.40E-209 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3590 | K03258 | - | csv:101214573 | 578.941 |