Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3590 ATGCCGCTTATTTCCGCTGCCAACGAACGCAACCGCAGCGAAGAAGAAGAAGAAGACGACGAAGAAGAATCTATGGCGGCAACTCCGTCACCGTGGGGCAAGCCCGGCGCCTGGGCTCTGGACTCCGAGGAGCACGAGGCCGAGCTTCTCAAGGACCTCCTCACCAACCAATCCCGCCCTAAATCCGACCCCGCCGGCGATTTCCCCTCCCTCTCCGCCGCCGCCGCCTCCAAGCCCAAGAGGAAGAAAGGTCAGTCCATTACCCTCTCCGAATTTCAGAATTATGGCGGTCCTAAGCCCTCCTCGGCTCATGTTGAGCCCAAGGGTCTCACGACGGAAGATCTGTTGCGCCTTCCCACCGGTCCGCGCCAGCGGACCGAGGAGGAGTTGGACCGGAACCGGCTCGGGGGTGGTTTCAGGAGTTGGGGCCAGAATAGTTCGTATGACAGGGGGAATCGGTATTCTAACGGTGAAGATTCGTCCAATTCTCGACGGGGTTCTAGGGGTTTTGATGAGGGCGACGATGGATCTAGTCGTGAATTTAGAAGGGAACCGTTGCCGTCTAGGGCTGATGAGATTGATGATTGGGGCGCTGGGAAGAAGCCTATGATGGGTAATGGATTCGAGAGGCGTGAGAGAGGAGGAGGAGGAGGAGGAGGAGGCTTTTTCGATTCGCATTCGTCGAAAGCAGACGAATCGGATAGCTGGGTTTCGAATAAGAGCTTTTCGCCTTCTGAGGGACGGAGATCAGGTGGTATTGGTGGATTTGATCGAGAGCGAAGAGGGGGATTTCCCTCAAACGGTGGCGGGGCGGATTCAGACAATTGGGGCCGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGATAATGGCGGTGGGATGGATTCAGATAACTGGGGCAAGAAATCTCAAGTGGCTAGAGGTGGAATTAGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGAGAATCAGGAGGCTTCAGGCACTGTAGTTAAGCCAAAGGGTTCCAATCCTTTTGGAAATGCAAGACCAAGGGAACAGGTATTGGCTGAGAAGGGGCAGGACTGGAAGAAGATTGATGAGCATCTTGATTCGATGAAAATTAAGGAAACGGCTGAGAGGGTTGAGAGAAGTGGGGCTTCGTTTGAGAGAAAAGGATTTGGGATTCGAAGTGGCCAGTCTCCTGAAGATCGGTCAGGGAGGAGTTGGAGGAGGCCTGAGTCTGGAAACTCGTCCTCAAAGTGGTGA 1266 54.27 MPLISAANERNRSEEEEEDDEEESMAATPSPWGKPGAWALDSEEHEAELLKDLLTNQSRPKSDPAGDFPSLSAAAASKPKRKKGQSITLSEFQNYGGPKPSSAHVEPKGLTTEDLLRLPTGPRQRTEEELDRNRLGGGFRSWGQNSSYDRGNRYSNGEDSSNSRRGSRGFDEGDDGSSREFRREPLPSRADEIDDWGAGKKPMMGNGFERRERGGGGGGGGFFDSHSSKADESDSWVSNKSFSPSEGRRSGGIGGFDRERRGGFPSNGGGADSDNWGRKSEGARGGIGDNGGGMDSDNWGKKSQVARGGISERPRLNLQPRSIPLNNENQEASGTVVKPKGSNPFGNARPREQVLAEKGQDWKKIDEHLDSMKIKETAERVERSGASFERKGFGIRSGQSPEDRSGRSWRRPESGNSSSKW 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44371545 44374178 + Sed0007163.2 Sed05g3590 716216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3590 421 Coils Coil 3 24 - -
Sed05g3590 421 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 25 412 IPR010433 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Sed05g3590 421 MobiDBLite consensus disorder prediction 320 337 - -
Sed05g3590 421 MobiDBLite consensus disorder prediction 378 421 - -
Sed05g3590 421 MobiDBLite consensus disorder prediction 120 135 - -
Sed05g3590 421 MobiDBLite consensus disorder prediction 1 38 - -
Sed05g3590 421 MobiDBLite consensus disorder prediction 139 163 - -
Sed05g3590 421 MobiDBLite consensus disorder prediction 52 350 - -
Sed05g3590 421 Pfam Plant specific eukaryotic initiation factor 4B 249 377 IPR010433 GO:0003743(InterPro)
Sed05g3590 421 Pfam Plant specific eukaryotic initiation factor 4B 31 247 IPR010433 GO:0003743(InterPro)
Sed05g3590 421 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0217 Sed-Chr1:1740413 Sed05g3590 Sed-Chr5:44371545 1.50E-109 dispersed
Sed04g3861 Sed-Chr4:46958214 Sed05g3590 Sed-Chr5:44371545 1.40E-86 dispersed
Sed05g2231 Sed-Chr5:35050580 Sed05g3590 Sed-Chr5:44371545 7.50E-69 dispersed
Sed05g3589 Sed-Chr5:44371545 Sed05g3590 Sed-Chr5:44371545 5.40E-209 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3590 K03258 - csv:101214573 578.941