Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3597 ATGGATCGTCCAGTTCTTCTCATCACTGTTATCACTCTCTTTTTGCTTCAAGATGTTGAATCCACGTCTTTTAAGTTAATCAACAAGTGCCGAACCACGATCTGGCCCGGTTTGTTATCCGGCGCCGGAACCGCCCAGCTTCCGACCACCGGTTTCCCCCTCCGCAGCGGCAAATCCAAGACCGTCCCGGTTCCCAAATCTTGGTCCGGCCGGTTATGGGCTCGGACCCTTTGCGGCCCGGATTCCGACGGCAAATTCTCTTGCGTCACCGGCGACTGCGGCTCCGGCAAAGTCGAGTGCGCCGGCGGCGGCGCGAAGCCGCCGGCGACCTTGGCGGAGTTCACGCTCAACGGCGCCGATGGGCTTGATTTCTATGACGTCAGCCTTGTCGACGGTTACAATATTCCGATGCTCGTTGTGGCCAAAGGTGGGACCAGAGGTGGCTGCTCCGCCACCGGGTGTTTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTCCGGGTGGCGCGTGGCGGCGGCGGCGGTAAGGGTGGGAGGAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCCCCGCAATTCTGTTGTAGCGAGGCGTTCTCTACGCCTGACACGTGTCGTCCTTCCGTATATTCGGAGTACTTTAAACATGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAGACCAGTACTTTCACTTGTGCCTCCGCCGATTACCTTATCGTATTTTGTCCACTGCCCTACACCAGTCAGAAAGTGTTGAGTGCAAAGAAAGACGGGGCAGCGCTACCGCTCGTGAACAAGACAATGATGTACCTGAGAAGCCGAAGAGCGAGCGGCATTCTATCTCCAGGCAGATAG 870 57.36 MDRPVLLITVITLFLLQDVESTSFKLINKCRTTIWPGLLSGAGTAQLPTTGFPLRSGKSKTVPVPKSWSGRLWARTLCGPDSDGKFSCVTGDCGSGKVECAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLVVAKGGTRGGCSATGCLVDLNGACPSELRVARGGGGGKGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEYFKHACPRAYSYAYDDKTSTFTCASADYLIVFCPLPYTSQKVLSAKKDGAALPLVNKTMMYLRSRRASGILSPGR 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44399214 44402040 + Sed0003388.1 Sed05g3597 716223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3597 289 Pfam Thaumatin family 28 248 IPR001938 -
Sed05g3597 289 ProSiteProfiles Thaumatin family profile. 21 248 IPR001938 -
Sed05g3597 289 PIRSF PR5 2 281 IPR001938 -
Sed05g3597 289 PANTHER OS03G0233200 PROTEIN 10 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed05g3597 289 Gene3D Thaumatin 22 248 IPR037176 -
Sed05g3597 289 SMART tha2 24 248 IPR001938 -
Sed05g3597 289 FunFam THAUMATIN-LIKE PROTEIN 1 22 248 - -
Sed05g3597 289 CDD TLP-PA 23 247 - -
Sed05g3597 289 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Sed05g3597 289 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Sed05g3597 289 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Sed05g3597 289 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Sed05g3597 289 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Sed05g3597 289 SUPERFAMILY Osmotin, thaumatin-like protein 23 248 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3597 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3597 Sed-Chr5:44399214 Sed05g3599 Sed-Chr5:44399214 1.30E-148 dispersed
Sed05g3597 Sed-Chr5:44399214 Sed05g3598 Sed-Chr5:44399214 4.90E-169 tandem
Sed01g2481 Sed-Chr1:18564854 Sed05g3597 Sed-Chr5:44399214 1.20E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160