Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3598 ATGGATCGTCCAGTTCTTCTCATCACTGTTATCACTCTCTTTTTGCTTCAAGATGTTGAATCCACGTCTTTTAAGTTAATCAACAAGTGCCGAACCACGATCTGGCCCGGTTTGTTATCCGGCGCCGGAACCGCCCAGCTTCCGACCACCGGTTTCCCCCTCCGCAGCGGCAAATCCAAGACCGTCCCGGTTCCCAAATCTTGGTCCGGCCGGTTATGGGCTCGGACCCTTTGCGGCCCGGATTCCGACGGCAAATTCTCTTGCGTCACCGGCGACTGCGGCTCCGGCAAAGTCGAGTGCGCCGGCGGCGGCGCGAAGCCGCCGGCGACCTTGGCGGAGTTCACGCTCAACGGCGCCGATGGGCTTGATTTCTATGACGTCAGCCTTGTCGACGGTTACAATATTCCGATGCTCGTTGTGGCCAAAGGTGGGACCAGAGGTGGCTGCTCCGCCACCGGGTGTTTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTCCGGGTGGCGCGTGGCGGCGGCGGCGGTAAGGGTGGGAGGAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCCCCGCAATTCTGTTGTAGCGAGGCGTTCTCTACGCCTGACACGTGTCGTCCTTCCGTATATTCGGAGTACTTTAAACATGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAGACCAGTACTTTCACTTGTGCCTCCGCCGATTACCTTATCGTATTTTGTCCACTGCCCTACACCAGTCAGAAAGTGTTGAGTGCAAAGAAAGACGGGGCAGCGCTACCGCTCGTGAACAAGACAATGATGTACCTGAGAAGCCGAAGAGCGAGCGGCATTCTATCTCCAGGTTATGTTCGATACTAA 879 56.88 MDRPVLLITVITLFLLQDVESTSFKLINKCRTTIWPGLLSGAGTAQLPTTGFPLRSGKSKTVPVPKSWSGRLWARTLCGPDSDGKFSCVTGDCGSGKVECAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLVVAKGGTRGGCSATGCLVDLNGACPSELRVARGGGGGKGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEYFKHACPRAYSYAYDDKTSTFTCASADYLIVFCPLPYTSQKVLSAKKDGAALPLVNKTMMYLRSRRASGILSPGYVRY 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44399214 44402040 + Sed0003388.2 Sed05g3598 716224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3598 292 FunFam THAUMATIN-LIKE PROTEIN 1 22 248 - -
Sed05g3598 292 PANTHER OS03G0233200 PROTEIN 10 248 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed05g3598 292 SUPERFAMILY Osmotin, thaumatin-like protein 23 248 IPR037176 -
Sed05g3598 292 ProSiteProfiles Thaumatin family profile. 21 248 IPR001938 -
Sed05g3598 292 Gene3D Thaumatin 22 248 IPR037176 -
Sed05g3598 292 Pfam Thaumatin family 28 248 IPR001938 -
Sed05g3598 292 PIRSF PR5 2 282 IPR001938 -
Sed05g3598 292 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Sed05g3598 292 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Sed05g3598 292 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Sed05g3598 292 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Sed05g3598 292 SMART tha2 24 248 IPR001938 -
Sed05g3598 292 CDD TLP-PA 23 247 - -
Sed05g3598 292 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3598 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3598 Sed-Chr5:44399214 Sed11g1092 Sed-Chr11:26594580 1.40E-99 dispersed
Sed05g3597 Sed-Chr5:44399214 Sed05g3598 Sed-Chr5:44399214 4.90E-169 tandem
Sed05g3598 Sed-Chr5:44399214 Sed05g3599 Sed-Chr5:44399214 1.30E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g138 Blo02g00698 . Bda06g00483 . . . . . . . . Cma20g00764 . Car20g00665 . . . . . . . . . . . . . . . . . . . . Cone10ag1178 Lsi10g00478 . Chy11g00276 . . . . . . . . . Sed05g3598 . Cmo20g00761 . . . . Cpe16g00306 . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . Cla02g01152 Cam02g1228 Cec02g1236 Cco02g1277 Clacu02g1209 Cmu02g1178 Cre02g1487 . Csa02g01372 . Cme11g00396
Vvi4g1121 Blo04g00882 Blo16g00082 . . . . . . . . Cma03g00680 Cma07g00423 . . . . Cpe10g00668 Bhi03g00861 Tan03g2089 Cmetu04g0243 . . . . . . . . . . . . . . Cone9ag1608 Lsi01g00595 . . Cme08g00937 Blo05g00709 . . . . . Bma03g00958 Bma06g00093 Sed05g3598 Cmo03g00705 Cmo07g00420 Cma16g01240 Cma20g00764 . . . . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . . . . . . . . Lsi07g01100 Csa06g03333 Chy02g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160