Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g3618 | ATGTCGATGTTGAAAACACAGAGGGCTCGGGTCATACGGCAGCGAGGCTTCGGTGACAGCCGCAGCTTGTCACCCGTCTCGACTATGGCGAGTCGGGTGGATGATTTTCAGGATCTGGTTGCACCCGTAGGCTGGCCTGAGTTGGCCAACTACGACATCCCCTCGATGGAGTTTCGAGCGAATCTGCCTATATCAACCATCTCGATGCCTCAGCAAGAGGCTAACTCCGCGGTCATCGGAGAGATTTCAAAGAAGAGAAAAGCCAACAACGAAACGGAAATGAAATCCAAAGTGAGAAATAGTCAATCTGAGAGTGGAAAAAACAGCGACGAAAGAATCAAACAATGTATAGAAGAAGATGAAGGATCAAAGATTACAACGCAAACAGAGACATTGAAACAGAATTCGAAAGTTTCGGTTAAAAAATCAGATTATGTTCATGTTAGAGCCCGTCGAGGACAAGCCACAGACAGCCATAGTCTTGCGGAAAGAGCAAGGAGAGAAAAGATAAGTGAAAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAGCAAAATTGCAGGGAAAGCTGGAATGCTTGATGAGATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTATCAATGAAATTGGGTACTGTGAATCCCAGACTTGAATTCATCCATGTGGATGACCTTTTTTCCAAACAGGGAAATTTACATGTGTTGCCAACCATAGAAATCTTACCAGAAACAGTTGATTCTTCCTCGTACATAAGTCAACAAACTCCATTGATGAATTCAACTTCTCCTTTTGAACTTTGTTCAACTTGGGGAGGCGATTTACAGAACCTTTATAATATGAGCATCCAGCAAGGAGAGTCGCCATTGTTGTCGTCGCCAAGCTTTTCGTCGCAACAATATTCAGTTATTGAAAATGAAAATGAAACATCCGTAATTGTTCCATTTTAA | 963 | 42.37 | MSMLKTQRARVIRQRGFGDSRSLSPVSTMASRVDDFQDLVAPVGWPELANYDIPSMEFRANLPISTISMPQQEANSAVIGEISKKRKANNETEMKSKVRNSQSESGKNSDERIKQCIEEDEGSKITTQTETLKQNSKVSVKKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCSKIAGKAGMLDEIINYVQSLQQQVEFLSMKLGTVNPRLEFIHVDDLFSKQGNLHVLPTIEILPETVDSSSYISQQTPLMNSTSPFELCSTWGGDLQNLYNMSIQQGESPLLSSPSFSSQQYSVIENENETSVIVPF | 320 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 44510229 | 44512531 | + | Sed0007212.1 | Sed05g3618 | 716244 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g3618 | 320 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 83 | 276 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Sed05g3618 | 320 | CDD | bHLH_AtBPE_like | 144 | 230 | - | - | |
| Sed05g3618 | 320 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 152 | 223 | IPR036638 | GO:0046983(InterPro) | |
| Sed05g3618 | 320 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 154 | 204 | IPR011598 | GO:0046983(InterPro) | |
| Sed05g3618 | 320 | FunFam | Basic helix-loop-helix transcription factor | 151 | 223 | - | - | |
| Sed05g3618 | 320 | SMART | finulus | 160 | 210 | IPR011598 | GO:0046983(InterPro) | |
| Sed05g3618 | 320 | MobiDBLite | consensus disorder prediction | 85 | 120 | - | - | |
| Sed05g3618 | 320 | Gene3D | - | 151 | 223 | IPR036638 | GO:0046983(InterPro) | |
| Sed05g3618 | 320 | Pfam | Helix-loop-helix DNA-binding domain | 158 | 205 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g3618 | Sed-Chr5:44510229 | Sed07g0257 | Sed-Chr7:2094106 | 4.90E-37 | dispersed | |
| Sed04g3919 | Sed-Chr4:47315722 | Sed05g3618 | Sed-Chr5:44510229 | 5.60E-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 38742 | PF00010 | HLH | 3.20E-06 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g3618 | - | - | - | 0.0 |