Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3619 ATGGTGAACATTTTCCACATCTTGGACCGGGTTCAACGGTGGGTGATGAAGGCGGCAGGAATGAAGCCGGAACGGGTCGAGATCGAACCGGGAACCAAAATGAACTTCTGGGCACCGACCGGAACCCCAAACAAAAACCCGAACCCCCCGGTGGTCCTACTCCACGGCTTCGCCGGCAACGCGATCATGACGTGGCAGTGTCAGGTGCTGAGCCTTGTCAGAACGCATGCCGTTTACGTGCCGGACTTTCTGTTCTTCGGGGAGTCGGCGACGGAGCGGGCGGAGAGGTCGCCGGAGTTTCAGGCGGAGTGCGTGGCGGAGGGGCTGAGGAAGCTGGGGGTGGACCGGCCGTGCGTGGTGGTGGGGTATAGCTATGGGGCCATGGTGGGGCTGAGGATGGCTGAGATGCATCCGGAGTTGGTGGCGGCGATGGTGGTGGTGGCGGCGCCCGCGGCGTTGACGGCGTCCATCAGCCGTGAGTCGCTGGAAAGGATTGGGTTTCAGAGTTGGTCGGATTACATGATTCCGACGACGGTGGCGGAGGTCAGATGTTTGTTAGAAATTGCTTCGTTTAAGTTGCCGCCGATTCCTGATTGGGTTTTCAAACATTATTTGGAGGCAATGGTTATTCACAGAAAGGAAAGAGCAGAACTTCTCCATGCTTTGGTTTCTCCAGATGATGTTACCATCTCTCAGTACCCACAGAAGCTGCATATCATATGGGGGCAAAATGACCGTGTATTTGATGTTCAAATTGCTCACAAGTTGAAAGAGCAATTTGAAGGAAAGGCAAGATTGGATTGCATACAAAAAGCAGGCCACACTGTACCAATGGAGCGCCCATTCATCTTCAACAAATGTCTTCAAAAATTTCTTCATTCCTTGCAAACTGATCAAATATGA 903 53.27 MVNIFHILDRVQRWVMKAAGMKPERVEIEPGTKMNFWAPTGTPNKNPNPPVVLLHGFAGNAIMTWQCQVLSLVRTHAVYVPDFLFFGESATERAERSPEFQAECVAEGLRKLGVDRPCVVVGYSYGAMVGLRMAEMHPELVAAMVVVAAPAALTASISRESLERIGFQSWSDYMIPTTVAEVRCLLEIASFKLPPIPDWVFKHYLEAMVIHRKERAELLHALVSPDDVTISQYPQKLHIIWGQNDRVFDVQIAHKLKEQFEGKARLDCIQKAGHTVPMERPFIFNKCLQKFLHSLQTDQI 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44523120 44527504 + Sed0027094.1 Sed05g3619 716245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3619 300 PRINTS Alpha/beta hydrolase fold signature 237 251 IPR000073 -
Sed05g3619 300 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Sed05g3619 300 PRINTS Alpha/beta hydrolase fold signature 75 90 IPR000073 -
Sed05g3619 300 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Sed05g3619 300 Gene3D alpha/beta hydrolase 4 299 IPR029058 -
Sed05g3619 300 Pfam alpha/beta hydrolase fold 49 153 IPR000073 -
Sed05g3619 300 PANTHER SI:DKEY-122A22.2 1 293 IPR052370 -
Sed05g3619 300 SUPERFAMILY alpha/beta-Hydrolases 20 293 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3619 Sed-Chr5:44523120 Sed07g1653 Sed-Chr7:13968275 4.30E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g601 . . Bda06g00935 . . . . Bma12g00515 . . . . Car02g00258 . . . . . . . . . . . . . . . . . . . . . Cone10ag0964 Lsi10g00369 . . . . . . . . . . . Sed05g3619 Cmo02g00401 . . . . . . Cpe05g01261 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . . Csa02g01258 . .
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63