Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3641 ATGCCGATCTCCCCTTCTCCTTCCCCTTCCCCCTCCGCCGCCGCCGCCGTCAATTTCCCTCCGCCTTCTTCCAAGCTCCCGGTCGACTTCAGCCCTCCTCTAATCGCCATGGTCGTCGTCATCGCCGCCGCCTTTCTCCTTGTTACCTATTCGCGTCTCATCTCCCGCCATCTCTTCCCTCCGATCATCCAGACTCTTCGCCGTCACCGCCGTCTCTGGCGCCGTTGGCGCCGCCGCCGACGCCGTCCCCAATCTTACCTCCCGTCCTCCTCCTCCGGCGGCGATTTGGACTCTCTCCCTTACGATTCGCCTTTCTTCGATCCTACCGATGGATTTTTCTCGTCCTACGGTCTCGACGAGTCCGTCATCAAGACGATTCCGCTCACCGTCTACACCGCCAAGAATCGCGACCGCGACTGCGCCGTTTGTCTTCTGGAATTCGAACACGACGATTACGTCCGTACGCTTCCGATCTGTTCCCACGCGTTTCATGTCGATTGTATAGACGTTTGGCTTCGATCGCACGCCAACTGTCCGCTCTGTCGCGCGGTTGTTTTCCGGCCGGAATCCCCGTTCACGCCGCTCATGGCCGCGAGGATCCGGCCGAGCCTCGACGATACGATCTTACGGAGCATCGTGTTGGAGCCGCTCGCGGTAGGTTTTATACCTAATCGCGATTCGGAGTCGGAGATCACGCCGTGCGTTGATGAGCCGAGGAATAGAAATTCGGCGGAGGATCGTAGAGATTTCTTGTTGAAGCGATCGTATTCGTTTGGATTCGAACGGAGCTTAGCGTCGGAGAGGATGATTCTGGAGCCGGCGACGGCGTCGCCGTGGAGGTACCGGCGGGGAAACTTCTGGAGCAAACGGCCGTCGCCGTCGCCGTTTGGATCTGTAGCGAAGGCGAGAGTGTTCTCGTTCCGATACTACAGAGGAATGAAGTCGCCGTTCTTCAGACGGAGAGGAGGATTCTTTCCGTTATCGGAATCGAGCTGGAGATTCTCCAATGGCGTCGGCGGAGGCTCGTCTAGACGTAGCAAGTCGATGACGAGTCCAATGTTTCTCCAATCATCGGCGGCCAACGGCGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGAGATCCCGAGGCGTTACTTTCACCGGAGAGATTCAACAGAAGATGA 1167 58.61 MPISPSPSPSPSAAAAVNFPPPSSKLPVDFSPPLIAMVVVIAAAFLLVTYSRLISRHLFPPIIQTLRRHRRLWRRWRRRRRRPQSYLPSSSSGGDLDSLPYDSPFFDPTDGFFSSYGLDESVIKTIPLTVYTAKNRDRDCAVCLLEFEHDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPLMAARIRPSLDDTILRSIVLEPLAVGFIPNRDSESEITPCVDEPRNRNSAEDRRDFLLKRSYSFGFERSLASERMILEPATASPWRYRRGNFWSKRPSPSPFGSVAKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLQSSAANGAAAFSSSRLRCGDPEALLSPERFNRR 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44652353 44654180 + Sed0000443.1 Sed05g3641 716267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3641 388 PANTHER RING-H2 FINGER PROTEIN ATL16 16 206 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Sed05g3641 388 CDD RING-H2_EL5-like 139 182 - -
Sed05g3641 388 FunFam RING-H2 finger protein ATL65 111 186 - -
Sed05g3641 388 SUPERFAMILY RING/U-box 136 188 - -
Sed05g3641 388 Pfam Ring finger domain 139 182 IPR001841 -
Sed05g3641 388 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Sed05g3641 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 186 IPR013083 -
Sed05g3641 388 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3641 Sed-Chr5:44652353 Sed12g0332 Sed-Chr12:2087502 4.30E-19 dispersed
Sed05g3641 Sed-Chr5:44652353 Sed12g1027 Sed-Chr12:6588990 1.30E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3641 - - - 0.0