Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3643 ATGGCTGGGCTTCTGAAAAAGTTTTTTCATGAGAAGCCTTCTTCTCCGGTTGTTGATGGTGATTTTAACCCTGAATACTCTTTTGCAATTGAGTATACAGGTCCTGGAATCAATTACGAGATTCCCCGTGCAGTTCCTATCAATGTTGATTATATTCCAACTGCTTCTGTAGTTGTTTCATCGTCTCAGTTTAGGGAGGATGTATCATCTTTGCCTGTGGTACAACCCATTGTTGAGAAGTTTAGGCGGGGCTCGAATTTGAGTCCCAATTCTGTAACCTCTGAAATCAAGGGAGACGTGCCTGTTTGTCTCGATGATCGTAAGAAAGATAGTGAGAAAGATGAATGTAATATCAATTCTTGTGATGGAATTGAAAGTTCTGGTGAACTTGAGAATTTGGATAAGATAGAGGGGAAATTAGAAAGCGGGATAGAATCATTGGAAATTCAGAATGAAAAGGATTTTCAAGGTTATACGAATTCAAGTGATTCGGAATCGGAAGATTCGGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGGGGAAGAGGAAGTTGAGAATGAGACTCGAGCGCAGCATGGCCGAAGGCCATCAGCTGTTACATTTGTCGATCCCCATTCAACCAACGCAATTTCTGAAGTGGCAGAATCAAGTCAATTTGAGGATGAAAGTATCCGTGAAATGCCTAGAGCTGTTAGGAAGGGGGGGAAGAAAGGATCGTGCTACTACTGCCTTAAGGGCAACCGTTTCATGGAAAAGGAAGTGTGCATTGTTTGTGGAGCCAAATATTGTATTGCCTGTGTGATAAGGGCAATGGGACCAATGCCAGAAGGAAGAAAGTGTATCACCTGTATTGGGTTCAGTATTGACGAATCAAGAAGAAACAACTTGGGTAAATCCTCTAAAGTGCTCAAGAGGTTGTTTACTGACTCAGAAGTTGTGAACACTCTGATGAGGGAAAAAGAGTGTGAAATTAATCAGCTACCTGCACGACTTGTTTATGTCAATGACGATCCTTTAACTCGAGAGAAGCTGCTTGTGCTGCAAAGGTGCCAAAACCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCAGGCTTCTGGGGAAAGGAAGGACGTAGACCGTGCCAGATAGTTAGCCCCCAGCTAGACGTCGGAGGTCGGATCAAGAGGAATGCGAGCAATGGAAATACAAACGTGTGCATCAATAATCGGGAAATCACTAAAAAAGAGCTCCGAATACTGAAGATGGCTGGAGTTCCTTGTGAAGGAAAACCTTCTTTTTGGGTTAGTCCAGATGGATCATATCAGGAAGAGGGAATGAACAACCGCGGGAAAATATGGGACAAGACTAGAACGAAACTAGCATGTGCTCTTTTTTCTTTGCCTATTCCTTCTTCTTCTGTCCCTTCTAGTGAGGAAAACGTGGTCAAATCTAGTTCCATTTCACTCGAGCAGAAAATGTTCCATAAACTTCTACTTGTTGGCCACGACAAATCTGGCACAAGTACCATATTCAAACAGGCCAAGCAAATCTATAAAGTTCCTTTTTCAGACGATGAGCGTCAAAACATTAAGTTCCTGATCCAAAGGAAACTGTATTGGTATATTAGTATACTACTGGAAGGACGGGAACGTTTCGAAGAAGAGATTTTGATGGATGAGAAGTATAAACAACCTGTGAATGATCCGTCCACCTCATCAGCATCAGGGAATGTTGTTCAGCTTGAGCGTAAAACCATCTATTCCCTTGGCCCTAAACTGAAAGTATTTGCAGATTGGCTTCTTGAAATTGTGGTGTCGGGTAACTTCGAAACCATATTTCCTGCAGCTACTCGTGTGTATGCGCAATCAGTGGAAGAGTTAATGAGGGATGAAGCCTTTCAAGCCACATACAGTAGAAGGACTGAACTAGAAATGCTCCCAAGAGTTGCAACTTACTTCCTTGATCGGGCTATTGACATTTCAAGTACAGAATATGACCCTTCTGACATTGACATCTTGTATGCCGAGGGAATCTCCTCATGTAAGAGCCTCAGTCACATGGAGTTCTTGTTTCCCGAGTCACGGCAAGACTCCATTCTCGATGCTCCATATCAGCACAACGCTGCTATAAGGTACCAGCTGATTCGAGTCAATCCCAGTACCCTGGGACAAAACTGCAGATGGTTGGAGATGTTTGAAGACACGAGCATCGTCCTTTTTTGCGTTTCTTTGGCTGATTACGACGAATTCGACGAAGATGAGAATGGAGTTATAGTAAATCGAATGATCGCAAGCAGGCAACTCTTTGAAAGGATTGCGACGGATGAAGCATCACGAGGGAAGAACTTCCTACTCATTCTCAACAAGTTTGATCTCTTTGAAGAGAAAATCATCCAAGTTCCTCTTTCCCAATGCGAGTGGTTCGACGACTTCAATCCAATGATCACTCAAAATTCTTCTGGAAGAAGCAGCAGAAGCACTAACCCGACGCTAGCCCAACGAGCGTATCAGTACATAGCTGTGAAATTCAAGAGATTGTTCTGTTCATTGACAGACAAAAAGCTGTTTGTTTCACAGACTACAGGGATGGAGCATGAAAATGTCAATGCAGCTCTCAGATATGCAAGGGAGATAATAAAATGGCAAGTTGACAAACCTAACATCATCAACACCACTGAAATTTCAAGTGCAAGTGTTGATATAAGCAGCTTCTCATAG 2718 42.72 MAGLLKKFFHEKPSSPVVDGDFNPEYSFAIEYTGPGINYEIPRAVPINVDYIPTASVVVSSSQFREDVSSLPVVQPIVEKFRRGSNLSPNSVTSEIKGDVPVCLDDRKKDSEKDECNINSCDGIESSGELENLDKIEGKLESGIESLEIQNEKDFQGYTNSSDSESEDSGLSSSSGIFAVRGEEEVENETRAQHGRRPSAVTFVDPHSTNAISEVAESSQFEDESIREMPRAVRKGGKKGSCYYCLKGNRFMEKEVCIVCGAKYCIACVIRAMGPMPEGRKCITCIGFSIDESRRNNLGKSSKVLKRLFTDSEVVNTLMREKECEINQLPARLVYVNDDPLTREKLLVLQRCQNPPKNLKPGRYWYDKESGFWGKEGRRPCQIVSPQLDVGGRIKRNASNGNTNVCINNREITKKELRILKMAGVPCEGKPSFWVSPDGSYQEEGMNNRGKIWDKTRTKLACALFSLPIPSSSVPSSEENVVKSSSISLEQKMFHKLLLVGHDKSGTSTIFKQAKQIYKVPFSDDERQNIKFLIQRKLYWYISILLEGRERFEEEILMDEKYKQPVNDPSTSSASGNVVQLERKTIYSLGPKLKVFADWLLEIVVSGNFETIFPAATRVYAQSVEELMRDEAFQATYSRRTELEMLPRVATYFLDRAIDISSTEYDPSDIDILYAEGISSCKSLSHMEFLFPESRQDSILDAPYQHNAAIRYQLIRVNPSTLGQNCRWLEMFEDTSIVLFCVSLADYDEFDEDENGVIVNRMIASRQLFERIATDEASRGKNFLLILNKFDLFEEKIIQVPLSQCEWFDDFNPMITQNSSGRSSRSTNPTLAQRAYQYIAVKFKRLFCSLTDKKLFVSQTTGMEHENVNAALRYAREIIKWQVDKPNIINTTEISSASVDISSFS 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44679112 44685279 + Sed0005225.1 Sed05g3643 716269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3643 905 FunFam Guanine nucleotide-binding protein G(k) subunit alpha 672 888 - -
Sed05g3643 905 Pfam G-protein alpha subunit 488 879 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Sed05g3643 905 ProSiteProfiles G-alpha domain profile. 493 895 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Sed05g3643 905 SUPERFAMILY Transducin (alpha subunit), insertion domain 522 675 IPR011025 GO:0007165(InterPro)
Sed05g3643 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 882 IPR027417 -
Sed05g3643 905 MobiDBLite consensus disorder prediction 151 207 - -
Sed05g3643 905 Gene3D - 680 885 IPR027417 -
Sed05g3643 905 PRINTS Alpha G protein (transducin) signature 735 763 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Sed05g3643 905 PRINTS Alpha G protein (transducin) signature 783 792 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Sed05g3643 905 PRINTS Alpha G protein (transducin) signature 496 511 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Sed05g3643 905 Gene3D - 523 676 IPR011025 GO:0007165(InterPro)
Sed05g3643 905 PANTHER OS01G0977800 PROTEIN 11 469 IPR053057 -
Sed05g3643 905 SMART galpha_1 481 889 IPR001019 GO:0003924(InterPro)|GO:0007186(InterPro)|GO:0019001(InterPro)|GO:0031683(InterPro)
Sed05g3643 905 MobiDBLite consensus disorder prediction 152 176 - -
Sed05g3643 905 FunFam Extra-large guanine nucleotide-binding protein 2 529 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3643 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3643 Sed-Chr5:44679112 Sed10g0397 Sed-Chr10:2417914 7.70E-221 dispersed
Sed05g3643 Sed-Chr5:44679112 Sed02g0041 Sed-Chr2:5055825 5.40E-174 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42