Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3646 ATGCCGCGCCCTTATTTTCACAAGCTTGTTCTATCATCCACTATCCAAGCTAGGAATTTGAGAATCCCAGAAACTTTTCTCAGGATGATCAGGGGCGAGCTTTCTGCTGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGTTGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTGGAGCATTATTCTATCAGGGTTGGGTTTTTATTAGTATTTAGATACGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACGTCTGAAATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCGTTCAAAACCGAATCTTTGACGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTACGTAATAAGCTATTTGGCGATGAATGGAATCTGCACGAATCAAAAGCTGCAAGTACATTGCAAGCCGAATATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTTCAGATGAGGTGAGATTCCAGAATTCAGGGGATGGTGTACAAAGAATTAAAAAGAGTGGAGGGAAAAAGCGTAAAATTGATTCCGGCGAGCCCCGCCCATCTGCCAGTAGTGAAGATTTAGGAGACATTCGCTTCAGGTTTTATGAAAGTGCATCTGCTAGAAAGAGAACTGTAACAGCAGAAGAAAGAGAAAGAGCTATCAATGCCGCAAAAGCTTTCGAGCCCACTAATCCCTTCTTTAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCAGTTCGATGTCTTTACAAAGTTGGTCGAGCCAAGTTAAGTCAGGGATGGTACGAGTTTTGCGTGGAAAATAATTTAGGGGAGGGTGATGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATTGTTCTGAAAGTTACCATGTTTCGTGTCAATGAAGAGGCTGGACGAATGGTTAACCCGAATCCCCCGAGCATGATGAGTCCACCCTCGCTGCGAAGTGTTACCCAAATTAAGCTGATCAGAAATTGA 1188 42.09 MPRPYFHKLVLSSTIQARNLRIPETFLRMIRGELSAVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYQSAALGGNQRNNYSVQNRIFDEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHESKAASTLQAEYLSTRDIGVQFSAVEVKKSSDEVRFQNSGDGVQRIKKSGGKKRKIDSGEPRPSASSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPTNPFFRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCVENNLGEGDVCVFELLRMREIVLKVTMFRVNEEAGRMVNPNPPSMMSPPSLRSVTQIKLIRN 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44717220 44720585 - Sed0019996.1 Sed05g3646 716272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3646 395 Gene3D - 246 366 IPR015300 -
Sed05g3646 395 ProSiteProfiles B3 DNA-binding domain profile. 269 364 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 SMART B3_2 269 364 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 CDD B3_DNA 4 96 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 SUPERFAMILY DNA-binding pseudobarrel domain 262 364 IPR015300 -
Sed05g3646 395 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Sed05g3646 395 MobiDBLite consensus disorder prediction 195 227 - -
Sed05g3646 395 CDD B3_DNA 267 362 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 Pfam B3 DNA binding domain 269 363 IPR003340 GO:0003677(InterPro)
Sed05g3646 395 MobiDBLite consensus disorder prediction 212 227 - -
Sed05g3646 395 Gene3D - 1 99 IPR015300 -
Sed05g3646 395 PANTHER B3 DOMAIN-CONTAINING 3 349 IPR050655 -
Sed05g3646 395 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3646 Sed-Chr5:44717220 Sed05g3648 Sed-Chr5:44717220 1.20E-213 dispersed
Sed05g3646 Sed-Chr5:44717220 Sed05g3647 Sed-Chr5:44717220 3.00E-230 tandem
Sed01g0324 Sed-Chr1:2443988 Sed05g3646 Sed-Chr5:44717220 9.60E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38743 PF02362 B3 1.20E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3646 - - - 0.0