Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3647 ATGACTGATTTTTCAGCTTTTCGAACCGGTGGTATCAAAAGGAAAATGCCGCGCCCTTATTTTCACAAGCTTGTTCTATCATCCACTATCCAAGCTAGGAATTTGAGAATCCCAGAAACTTTTCTCAGGATGATCAGGGGCGAGCTTTCTGCTGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGTTGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTGGAGCATTATTCTATCAGGGTTGGGTTTTTATTAGTATTTAGATACGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACGTCTGAAATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCGTTCAAAACCGAATCTTTGACGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTACGTAATAAGCTATTTGGCGATGAATGGAATCTGCACGAATCAAAAGCTGCAAGTACATTGCAAGCCGAATATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTTCAGATGAGGTGAGATTCCAGAATTCAGGGGATGGTGTACAAAGAATTAAAAAGAGTGGAGGGAAAAAGCGTAAAATTGATTCCGGCGAGCCCCGCCCATCTGCCAGTAGTGAAGATTTAGGAGACATTCGCTTCAGGTTTTATGAAAGTGCATCTGCTAGAAAGAGAACTGTAACAGCAGAAGAAAGAGAAAGAGCTATCAATGCCGCAAAAGCTTTCGAGCCCACTAATCCCTTCTTTAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCAGTTCGATGTCTTTACAAAGTTGGTCGAGCCAAGTTAAGTCAGGGATGGTACGAGTTTTGCGTGGAAAATAATTTAGGGGAGGGTGATGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATTGTTCTGAAAGTTACCATGTTTCGTGTCAATGAAGAGGCTGGACGAATGGTTAACCCGAATCCCCCGAGCATGATGAGTCCACCCTCGCTGCGAAGTGTTACCCAAATTAAGCTGATCAGAAATTGA 1233 41.93 MTDFSAFRTGGIKRKMPRPYFHKLVLSSTIQARNLRIPETFLRMIRGELSAVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYQSAALGGNQRNNYSVQNRIFDEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHESKAASTLQAEYLSTRDIGVQFSAVEVKKSSDEVRFQNSGDGVQRIKKSGGKKRKIDSGEPRPSASSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPTNPFFRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCVENNLGEGDVCVFELLRMREIVLKVTMFRVNEEAGRMVNPNPPSMMSPPSLRSVTQIKLIRN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44717220 44720585 - Sed0019996.2 Sed05g3647 716273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3647 410 SUPERFAMILY DNA-binding pseudobarrel domain 277 379 IPR015300 -
Sed05g3647 410 MobiDBLite consensus disorder prediction 227 242 - -
Sed05g3647 410 Pfam B3 DNA binding domain 284 378 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 Pfam B3 DNA binding domain 22 111 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Sed05g3647 410 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 CDD B3_DNA 19 111 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 CDD B3_DNA 282 377 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 SMART B3_2 284 379 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 SMART B3_2 21 113 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 MobiDBLite consensus disorder prediction 208 242 - -
Sed05g3647 410 Gene3D - 13 114 IPR015300 -
Sed05g3647 410 Gene3D - 261 381 IPR015300 -
Sed05g3647 410 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677(InterPro)
Sed05g3647 410 PANTHER B3 DOMAIN-CONTAINING 18 364 IPR050655 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0324 Sed-Chr1:2443988 Sed05g3647 Sed-Chr5:44717220 9.60E-51 dispersed
Sed01g0325 Sed-Chr1:2450488 Sed05g3647 Sed-Chr5:44717220 2.00E-203 dispersed
Sed01g0326 Sed-Chr1:2450488 Sed05g3647 Sed-Chr5:44717220 5.50E-187 dispersed
Sed01g0327 Sed-Chr1:2450488 Sed05g3647 Sed-Chr5:44717220 9.30E-145 dispersed
Sed05g3647 Sed-Chr5:44717220 Sed07g1220 Sed-Chr7:9115138 9.70E-38 dispersed
Sed05g3646 Sed-Chr5:44717220 Sed05g3647 Sed-Chr5:44717220 3.00E-230 tandem
Sed05g3647 Sed-Chr5:44717220 Sed05g3648 Sed-Chr5:44717220 1.20E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38744 PF02362 B3 1.20E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3647 - - - 0.0