Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3648 ATGATCAGGGGCGAGCTTTCTGCTGTTGCAACACTTACTGTTCCTGATGGCCATGTTTGGCGTGTGGGGTTGAGGAAAGTTGATAATAAATTTTGGTTTGAAGATGGTTGGCATGGATTTCTGGAGCATTATTCTATCAGGGTTGGGTTTTTATTAGTATTTAGATACGAGGGAAACTCATCATTCTGTGTTTTTATCTTTAATCTTAATACGTCTGAAATAAACTACCAATCTGCTGCTCTCGGTGGTAATCAAAGGAACAATTACAGCGTTCAAAACCGAATCTTTGACGAAATGGAGGATTATGACATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCTGGTTCTTTACGTAATAAGCTATTTGGCGATGAATGGAATCTGCACGAATCAAAAGCTGCAAGTACATTGCAAGCCGAATATTTATCTACTCGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTTCAGATGAGGTGAGATTCCAGAATTCAGGGGATGGTGTACAAAGAATTAAAAAGAGTGGAGGGAAAAAGCGTAAAATTGATTCCGGCGAGCCCCGCCCATCTGCCAGTAGTGAAGATTTAGGAGACATTCGCTTCAGGTTTTATGAAAGTGCATCTGCTAGAAAGAGAACTGTAACAGCAGAAGAAAGAGAAAGAGCTATCAATGCCGCAAAAGCTTTCGAGCCCACTAATCCCTTCTTTAGGGTCGTCTTGCGACCATCTTATCTATACAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCAGGATTCATCAAACTTCAGACACCTGATGGGAGACAGTGGCCAGTTCGATGTCTTTACAAAGTTGGTCGAGCCAAGTTAAGTCAGGGATGGTACGAGTTTTGCGTGGAAAATAATTTAGGGGAGGGTGATGTTTGTGTGTTCGAGCTTCTCAGGATGAGAGAAATTGTTCTGAAAGTTACCATGTTTCGTGTCAATGAAGAGGCTGGACGAATGGTTAACCCGAATCCCCCGAGCATGATGAGTCCACCCTCGCTGCGAAGTGTTACCCAAATTAAGCTGATCAGAAATTGA 1104 42.03 MIRGELSAVATLTVPDGHVWRVGLRKVDNKFWFEDGWHGFLEHYSIRVGFLLVFRYEGNSSFCVFIFNLNTSEINYQSAALGGNQRNNYSVQNRIFDEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHESKAASTLQAEYLSTRDIGVQFSAVEVKKSSDEVRFQNSGDGVQRIKKSGGKKRKIDSGEPRPSASSEDLGDIRFRFYESASARKRTVTAEERERAINAAKAFEPTNPFFRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCVENNLGEGDVCVFELLRMREIVLKVTMFRVNEEAGRMVNPNPPSMMSPPSLRSVTQIKLIRN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44717220 44720585 - Sed0019996.3 Sed05g3648 716274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3648 367 CDD B3_DNA 239 334 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 Gene3D - 1 71 IPR015300 -
Sed05g3648 367 SMART B3_2 241 336 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 Pfam B3 DNA binding domain 241 335 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 Pfam B3 DNA binding domain 7 68 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 Gene3D - 218 338 IPR015300 -
Sed05g3648 367 SUPERFAMILY DNA-binding pseudobarrel domain 6 77 IPR015300 -
Sed05g3648 367 MobiDBLite consensus disorder prediction 167 199 - -
Sed05g3648 367 PANTHER B3 DOMAIN-CONTAINING 3 321 IPR050655 -
Sed05g3648 367 MobiDBLite consensus disorder prediction 184 199 - -
Sed05g3648 367 ProSiteProfiles B3 DNA-binding domain profile. 1 70 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 ProSiteProfiles B3 DNA-binding domain profile. 241 336 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 CDD B3_DNA 4 68 IPR003340 GO:0003677(InterPro)
Sed05g3648 367 SUPERFAMILY DNA-binding pseudobarrel domain 234 336 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3646 Sed-Chr5:44717220 Sed05g3648 Sed-Chr5:44717220 1.20E-213 dispersed
Sed05g3648 Sed-Chr5:44717220 Sed07g1220 Sed-Chr7:9115138 1.40E-32 dispersed
Sed05g3647 Sed-Chr5:44717220 Sed05g3648 Sed-Chr5:44717220 1.20E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38745 PF02362 B3 1.00E-18 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3648 - - - 0.0