Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3655 ATGCCTTCCAAAACTCTCATTTTTGTATCTTCTATCTTCCTATTTGTTCCTTGTCTCTTTTTCATTCCATCTCTTTCAGCCCCTACTTATAATTATAACACTCAAAAAGCTTATTCTCAACTTAGATATGATTTTTACGACGAATCATGTCCTCATTTGCCTATGATAATTCGAGATAATATTTGGGTGGCTGTCCAAAATGATTCGAGAATCGCTGCTTCGCTTCTGCGGTTGCAGTTCCATGATTGTATCGTAGATGGATGTGATGCATCGGTTCTTCTTGATGATACGAAGGACATGAAAGGTGAGAAAAATGCTCCAGGCAATGCGAAATCGCTTCGAGGATTTGAAGTGTTAAATGCTATAAAAGCAGATTGTGAAACATATTGTCCACGAACAATTTCATGTGCTGATATAATTGGTCTTGCAGCTAGAGAAGCTGTATTTCTGGTCGGAGGGCCATCCTGGAACTATCCACTAGGACGCAGAGATGGGTTAAATGCAAGCATAAAATCCGTCTCGGAACAGCTACCATCTCCCAAGGCATCACTCGAAAACAACACCGCAAAGTTCACCTCGAAGGGCCTCGACTTAAAGGACCTCGTCGCCCGCCTCTTCAACTTCAAGGGCTCCGGCCAGCCCGACCCGGACATCAACTCCGCGATGCTCTCCGACCTGCGCAACAAGTGCCCGAACAGAAACGACGGCACCGGGGCCAATCTGGCCCCGCTGGATGTGGCCAGTTATGACAGGTTCGACAACGAGTATTACACGAATCTGATCGGCGGGGTCGGGCTGTTGCAGTCGGACCAGGGTCTGATGGAGGACGAGTACACGGCTCAGTTGGTTAGGCAGTACAGTTTTGATACTGATTTGTTTTATGATGAGTTTGCTGAGTCGATGATGAGGCTGAGCTTGGTTGGGGTTCTTACTGGCCGTGATGGGCAGATTAGGAAGGAATGTCACGTTGTTAATGTTGGATGA 984 46.65 MPSKTLIFVSSIFLFVPCLFFIPSLSAPTYNYNTQKAYSQLRYDFYDESCPHLPMIIRDNIWVAVQNDSRIAASLLRLQFHDCIVDGCDASVLLDDTKDMKGEKNAPGNAKSLRGFEVLNAIKADCETYCPRTISCADIIGLAAREAVFLVGGPSWNYPLGRRDGLNASIKSVSEQLPSPKASLENNTAKFTSKGLDLKDLVARLFNFKGSGQPDPDINSAMLSDLRNKCPNRNDGTGANLAPLDVASYDRFDNEYYTNLIGGVGLLQSDQGLMEDEYTAQLVRQYSFDTDLFYDEFAESMMRLSLVGVLTGRDGQIRKECHVVNVG 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44756931 44759306 + Sed0000788.1 Sed05g3655 716281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3655 327 FunFam Peroxidase 44 192 - -
Sed05g3655 327 Gene3D Peroxidase, domain 2 178 203 - -
Sed05g3655 327 Gene3D Peroxidase, domain 2 204 304 - -
Sed05g3655 327 CDD secretory_peroxidase 40 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g3655 327 Gene3D - 44 177 - -
Sed05g3655 327 Gene3D - 305 325 - -
Sed05g3655 327 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 133 143 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 114 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 152 167 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Haem peroxidase superfamily signature 152 164 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Haem peroxidase superfamily signature 134 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 ProSiteProfiles Plant heme peroxidase family profile. 40 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 PANTHER PEROXIDASE 72-RELATED 19 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 SUPERFAMILY Heme-dependent peroxidases 40 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3655 327 Pfam Peroxidase 58 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3655 Sed-Chr5:44756931 Sed14g0821 Sed-Chr14:15904860 5.70E-89 dispersed
Sed01g0335 Sed-Chr1:2527247 Sed05g3655 Sed-Chr5:44756931 6.10E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3655 K00430 - csv:101209504 481.87