Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3657 ATGTTAGCTTGCATTTCAACTACTCTAAGCTATGCCAATGAGGGTTGGTTTAGAGCAAGTAATTGTACTTCCCCTTCCAAACCTAGGTATAGGCATCCTCGGCCACCACCACCATCTCGTCAATTTTCACCGCCGCCACCACCAGCACGACGACCTCGAACACCACCACCACCAATACGACGACCTCGAACACCACCATTTCCACGACCTCAACCACCGCCACAACGACCTAGAACACCACCACCACGGCACGTGCCATCGCCACCACCACCGTCAAAACATCCACGAACACCGCCACCTCCACCGTCGTCATCACCGACCCCACAAAGTCCAAGAAAGATTATAGTGGGTGGTTCTAAGTATTGGCGCCTTGGCTTCAACTATAGTGATTGGACGGTTAAGAAAGGTCCCTTCTATCAAAATGACATTCTAGTCTTCAAGTACGACCCTCCAAACAGTTCAACTCCTCCTCATAGTGTTTATTTGCTACCAAACATGCGAAGTTTCATTAAGTGTGATTTTGGAAGGGCCAAAATGATTGCAAATTTAACACAAGGAAAGGGGAATGGCTTTAGGTTTGTGCTTAAACAGAAAACTCCTTACTACTTTGCATGTGGAGAAGGCAATGGCTTCCATTGCAATAGTGGATCCATGAAATTCTCTTTAACACCAAAGTCAAGACCTCTACCATCACCACCGCCACCATCACGACAGCCACGAACACCACCATCCCAACGTGTGCCGCCACCTCCACCATCGTCATCAGTACCCCCACCTCCAAGAAAGATCATAGTGGGTGGTTCTGAAAACTGGCATATTGGCTTCAACTACAATGATTGGGCGATTAAAAATGCTCCCTTTTATCTAAATGATATTCTAGTATTCAAATATGATGGTCCAAACAGTTCATCTCCTTCTCATAGTGTTTATGTGCTACCAAACAAGGAAAGCTACACAAACTGTGATTTTGGAAAAGCCAAAATGGTTTCAAATTTAACACAAGGAATTGGAGATGGCTTTGAGTTTGTGCTCAACAACCAAAACCCTTACTATTTTGCCTGTGGAGAAGGCTTTGGTTTCCATTGCAAAGTTGGATCCATGAAATTCACTATCACACCAATACTTCAACCCTCATCATAA 1140 45.0 MLACISTTLSYANEGWFRASNCTSPSKPRYRHPRPPPPSRQFSPPPPPARRPRTPPPPIRRPRTPPFPRPQPPPQRPRTPPPRHVPSPPPPSKHPRTPPPPPSSSPTPQSPRKIIVGGSKYWRLGFNYSDWTVKKGPFYQNDILVFKYDPPNSSTPPHSVYLLPNMRSFIKCDFGRAKMIANLTQGKGNGFRFVLKQKTPYYFACGEGNGFHCNSGSMKFSLTPKSRPLPSPPPPSRQPRTPPSQRVPPPPPSSSVPPPPRKIIVGGSENWHIGFNYNDWAIKNAPFYLNDILVFKYDGPNSSSPSHSVYVLPNKESYTNCDFGKAKMVSNLTQGIGDGFEFVLNNQNPYYFACGEGFGFHCKVGSMKFTITPILQPSS 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44774214 44776053 + Sed0012283.1 Sed05g3657 716283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3657 379 Gene3D - 112 230 IPR008972 -
Sed05g3657 379 Gene3D - 261 378 IPR008972 -
Sed05g3657 379 MobiDBLite consensus disorder prediction 29 108 - -
Sed05g3657 379 MobiDBLite consensus disorder prediction 16 114 - -
Sed05g3657 379 Pfam Plastocyanin-like domain 271 365 IPR003245 GO:0009055(InterPro)
Sed05g3657 379 ProSiteProfiles Phytocyanin domain profile. 261 375 IPR003245 GO:0009055(InterPro)
Sed05g3657 379 SUPERFAMILY Cupredoxins 113 223 IPR008972 -
Sed05g3657 379 PANTHER GLYCINE-RICH PROTEIN-LIKE 42 227 - -
Sed05g3657 379 PRINTS Proline rich extensin signature 78 95 - -
Sed05g3657 379 PRINTS Proline rich extensin signature 58 74 - -
Sed05g3657 379 PRINTS Proline rich extensin signature 37 58 - -
Sed05g3657 379 PRINTS Proline rich extensin signature 25 37 - -
Sed05g3657 379 MobiDBLite consensus disorder prediction 222 261 - -
Sed05g3657 379 ProSiteProfiles Phytocyanin domain profile. 112 226 IPR003245 GO:0009055(InterPro)
Sed05g3657 379 SUPERFAMILY Cupredoxins 262 373 IPR008972 -
Sed05g3657 379 MobiDBLite consensus disorder prediction 226 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3657 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00308 . . . . . . . . . . . Sed05g3657 . . . . . . . . Bhi10g02079 Tan05g1401 Cmetu11g0840 . . . . Cla09g01710 Cam09g1806 . . . . Cre01g0701 . Csa02g01198 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004690 1 1 0 1 1 1 4 0 0 0 1 0 2 0 1 2 0 3 0 1 1 4 0 3 2 1 2 1 2 6 41