Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3681 ATGGAAGCCTCTTTGTATTTCATTCTTTTTCTTCATTTGTCCTTTCTTGTTGAGTCAATTCATTTCAAAATTGATCAATTCAATCCAAATCAAATCCTTTTGCTTTTTCAAGGAGATGCAGCTCCTTCAAATGGAGCACTTCTTTTCAGTGATCCTGAATATTCATGTCAAGTTGGAAGAGCTATTTACAAAAATGATATCCCAATTTGGGATTCTAAAACAGGAAAACTCACTGACTTCACTTCCCATTTCAGCTTCACAATTGATACTCAAAATGTTCAAAATTATGGCCATGGAATTGCATTTTTCTTAGCTCCTTCTGGTTCTCAACTCCCTTCAAATTCAGCTGGTGGGTTTCTTGGCCTTTACAACAAAACATACACCAATTCACCTTTGAACCAAATTGTTCATGTTGAATTTGATTCCTTTTCTGACCCTGATTGGGATCCTCTGTTTGAACATGTTGGCATCAACATTAACTCTGTTTCTTCCTCTAATTTCACCAAGTGGAATGTCACTTTACATAGCTTGGACATTATTGATGTGTTGATTTCTTATGATTCAGCCACTAAAACCATGAGTGTGTCATGGAAATATCAAAAAACCTCAACCCCTTTGGAAAACACAACACTTTATTACCAAATTGACCTTATGAAAGTTCTTCCTCAGTGGGCTACTGTTGGAATTTCAGCTGCAACAGGGGCATATTCAGAGAGAAATTTGTTATTTTCATGGGAATTCAACTCCACCTTGGAGATGAAAAGACCAAGTGAAAATAATGGGAAAAAAGTTGATGTAATTGTTGGAGCAACAGTTTCAATTGGAGGTTTGTTGATTATTGTCATGGCAATAGCATCATTTATAGTGTTTAGGAAATGGAAGCAAAAGAAAAGAAAAGGGGAGCTGCAAAATCTTGAGGAAGTGAACTTGACATCACTTAACAAAGATTTGGAAAGAGGGGTTGGACCAAGAAGGTTTTCTCCCAAGCTTCTTGCCATGGCAACCAACAATTTTTCAAATGATAGAAAGCTTGGCCAAGGAGGATTTGGTGCAGTCTATAGGGGGTACATACAAGATTTGGATTTAACAGTAGCTGTTAAGAAAATCTCAAGGGGTTCAAAGCAAGGAAGGAAAGAGTACATAACAGAGGTGAAGATCATTAGCCGGCTTCGACATCGAAATTTAGTGCAACTCATAGGTTGGTGTCATGATAAAGGAGAGTTCTTGCTAGTTTATGAATTCATGTCTAATGGAAGCCTAGATTCTCATCTGTTTGGCAAGAGAAATCCTTTAGCTTGGACTTTGAGATACAAAATTGCATTAGGCTTAGCCTCTGCATTGCTCTATCTCCATGAAGAATGGGAACAATGTGTTGTTCATAGAGATATTAAATCTAGCAATGTCATGTTAGATTCAAACTTCAACGTTAAGCTCGGCGATTTCGGGCTAGCGCGATTGATGGACCATGAGTTGGGAGCTCAAACAACAGGGTTGGTTGGAACTTTAGGCTACTTAGCTCCTGAATACATAAGCACAGGCAGAGCTAGTAAAGAATCTGATGTGTTTAGCTTTGGAGTGGTTGCATTAGAGATTGTGAGTGGAAAAATGTCAAGAACTTCAATGGAAAAGGAATCTCATAAGGGTTTGGTGGAGTGGATTTGGGATCTTTATGGAAATAGACAATTGTTTGAGGGCATGGATGAGAAATTGGAATCTGATTGTGACAAAAAACAGGTTGAATGTTTGATGGTTGTTGGATTATGGTGTGCTTATCCAGACCCTAATCTTAGACCTTCAATTAAACAAGCAATTCAAGTTCTTAACTTTGAGACAACAATGCCTAATCTTCCAACTAAAATGCCTGTCCCTACTTATCATGCTCCTTCTACATCGATGAACTCGAATGAACCTTATATTACTGTAAGTCTTGACATGGGTCGTTGA 1944 37.96 MEASLYFILFLHLSFLVESIHFKIDQFNPNQILLLFQGDAAPSNGALLFSDPEYSCQVGRAIYKNDIPIWDSKTGKLTDFTSHFSFTIDTQNVQNYGHGIAFFLAPSGSQLPSNSAGGFLGLYNKTYTNSPLNQIVHVEFDSFSDPDWDPLFEHVGININSVSSSNFTKWNVTLHSLDIIDVLISYDSATKTMSVSWKYQKTSTPLENTTLYYQIDLMKVLPQWATVGISAATGAYSERNLLFSWEFNSTLEMKRPSENNGKKVDVIVGATVSIGGLLIIVMAIASFIVFRKWKQKKRKGELQNLEEVNLTSLNKDLERGVGPRRFSPKLLAMATNNFSNDRKLGQGGFGAVYRGYIQDLDLTVAVKKISRGSKQGRKEYITEVKIISRLRHRNLVQLIGWCHDKGEFLLVYEFMSNGSLDSHLFGKRNPLAWTLRYKIALGLASALLYLHEEWEQCVVHRDIKSSNVMLDSNFNVKLGDFGLARLMDHELGAQTTGLVGTLGYLAPEYISTGRASKESDVFSFGVVALEIVSGKMSRTSMEKESHKGLVEWIWDLYGNRQLFEGMDEKLESDCDKKQVECLMVVGLWCAYPDPNLRPSIKQAIQVLNFETTMPNLPTKMPVPTYHAPSTSMNSNEPYITVSLDMGR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 44942308 44944408 - Sed0012493.1 Sed05g3681 716307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3681 647 ProSiteProfiles Protein kinase domain profile. 338 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3681 647 Gene3D Phosphorylase Kinase; domain 1 323 414 - -
Sed05g3681 647 SUPERFAMILY Protein kinase-like (PK-like) 322 630 IPR011009 -
Sed05g3681 647 PANTHER - 33 618 IPR050528 GO:0005886(PANTHER)
Sed05g3681 647 CDD lectin_legume_LecRK_Arcelin_ConA 20 251 IPR001220 GO:0030246(InterPro)
Sed05g3681 647 ProSitePatterns Protein kinases ATP-binding region signature. 344 368 IPR017441 GO:0005524(InterPro)
Sed05g3681 647 Gene3D - 17 265 - -
Sed05g3681 647 FunFam L-type lectin-domain containing receptor kinase IX.1 18 260 - -
Sed05g3681 647 Pfam Legume lectin domain 20 260 IPR001220 GO:0030246(InterPro)
Sed05g3681 647 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 254 IPR013320 -
Sed05g3681 647 Pfam Protein kinase domain 339 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3681 647 FunFam Lectin-domain containing receptor kinase A4.3 415 627 - -
Sed05g3681 647 FunFam L-type lectin-domain containing receptor kinase IX.1 323 414 - -
Sed05g3681 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3681 647 SMART serkin_6 338 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3681 647 CDD STKc_IRAK 344 608 - -
Sed05g3681 647 Gene3D Transferase(Phosphotransferase) domain 1 415 629 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0356 Sed-Chr1:2723769 Sed05g3681 Sed-Chr5:44942308 9.40E-59 dispersed
Sed01g0357 Sed-Chr1:2730600 Sed05g3681 Sed-Chr5:44942308 3.60E-305 dispersed
Sed05g3681 Sed-Chr5:44942308 Sed13g1063 Sed-Chr13:9175758 3.60E-172 dispersed
Sed05g3681 Sed-Chr5:44942308 Sed07g1799 Sed-Chr7:20174767 3.10E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79296 PF00069 Pkinase 2.60E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3681 - - - 0.0