Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3697 ATGGTTATTCTTGGATTATTTTTGGCTTGGAGAATTCGACATCCGAACACTGACGCCTACTGGCTATGGGCAATGTCAGTTGTCTGTGAAGTATGGTTTGCTTTTTCTTGGCTTCTTGATCAATTGCCCAAGCTTTGCCCTGTAAATCGAGCCACAGATCTTAATGTATTGAAGGATAAGTTTGAAACACCTAGTCCGAGTAACCCAAGTGGAAAATCTGATCTTCCAGGAATAGATATATTTGTTTCTACTGCAGATCCTGAAAAAGAGCCCCCTCTTGTCACAGCAAACACAATTTTGTCGATTTTAGCCGCTGATTATCCCGTTGAAAAGCTCGCTTGCTATGTTTCAGATGATGGAGGTGCACTTCTAACCTTCGAGGCCATGGCCGAAGCAGCGAGTTTTGCTAATACATGGGTGCCTTTCTGTCGAAAACATAATATTGAACCTAGAAATCCTGAGTCTTACTTCAATTTGAAGAGAGATCCATTCAAGAATAAAGTGCGATCTGATTTTGTTAAGGATCGCAGACGCGTTAAACGTGAGTATGACGAGTTCAAGGTTCGAATAAATGGCCTTCCTGATTCTATTCGTCGTCGGTCTGATGCCTATCATGCAAGGGAGGAAATCAAAGCTATGAAGTATCAGAGGCAACATGTGGCCATTGATGAACCCATGGAAAGTGTAAAGATACCTAGAGCAACATGGATGGCAGATGGAACTCATTGGCCAGGAACATGGATGCAGCCTTCTGCCGAGCACTCCAAGGGTGACCATGCTGGTATAATACAGGTTATGCTTAAACCTCCAAGTGATGAACCATTACATGGAGCTGCAGATGAAACTAGACTAATTGACCTATCTGAGGTTGACATTCGCCTTCCTCTTCTTGTTTATGTTTCTCGAGAAAAACGTCCCGGCTATGATCATAACAAAAAAGCAGGGGCCATGAATGCTTTAGTTCGAGCTTCAGCTATTATGTCGAATGGGCCATTTATCCTCAACCTTGATTGTGACCATTATATCTACAACTCCCAGGCAATGAGAGAAGGAATGTGTTTCATGATGGACCGTGGAGGAGATCGTATTTGTTATGTTCAATTCCCACAAAGGTTTGAGGGCATTGATCCTTCAGATCGGTATGCCAATCACAACACTGTGTTCTTTGATGTTAACATGCGAGCTCTTGATGGTCTTCAAGGTCCAGTATATGTTGGAACTGGATGCCTCTTTAGAAGGATTGCCCTTTATGGTTTTGACCCACATAGATCAAAAGAGCGGCACCTTGGTTGTTGTAGTTGCTGCTTTGGTAAACAAAGAAAGCATACATCGATTGCGAATAGCCCTGAAGAGCATCGAGGCCTAAGAATGGGCGACTCTGACGATGAGGAGATGGACCTATCCTTGTTCCCAAAAAGATTTGGAAATTCTTCTATTCTAGTTGATTCAATTCCAGTTGCAGAGTTTCAGGGACGTCCATTGGCTGATCACCCAGCTGTAAAATATGGACGCCCTCCTGGTGCTCTTACCATTCCTCGTGAGCTTCTCGACGCGTCAACTGTTGCCGAGGCAATCAGTGTCATTTCTTGTTGGTATGAAGACAAGACCGAATGGGGTCAACGAGTTGGGTGGATTTATGGATCTGTCACAGAAGATGTGGTCACTGGATATAGGATGCATAATAGAGGGTGGAAATCTATTTATTGTGTAACCAAACGTGACGCTTTTCGTGGAACTGCACCTATCAATCTCACTGATAGGCTTCATCAAGTCCTTCGATGGGCTACTGGGTCCGTCGAGATTTTTTTCTCTAGGAATAATGCACTTTTAGCTAGTTCAAGAATGAAGATTTTGCAAAGAATAGCGTATCTTAATGTCGGAATCTACCCGTTCACTTCCTTCTTTCTCATAGTCTACTGTTTTCTCCCTGCACTTTCCTTATTTTCAGGGCAATTTATTGTTCAGACTCTCAATGTCACTTTCCTCACTTACCTTTTAGTCATCACCATCACTCTATGCCTACTTGCCATTCTTGAAATCAAATGGTCTGGCATTGAATTAGAAGAATGGTGGAGAAATGAACAGTTTTGGTTGATTGGAGGCACTAGTGCCCATCTTGCTGCTGTGCTTCAGGGTTTGCTAAAAGTCATTGCTGGGATTGAAATTTCTTTCACCTTGACATCCAAATCAGCTGGAGACGACGTGGACGATGAATTTGCCGATCTCTACATCGTAAAATGGACGTCCCTCATGATTCCACCCATCACAATCATGATGGTCAACCTAATCGCCATCGCAGTCGGGGTCAGCCGCACAATCTACAGCACAATTCCACAGTGGAGCCGCTTGATTGGTGGTGTTTTCTTCAGCTTTTGGGTTCTGGCTCATCTCTACCCGTTCGCCAAGGGGCTCATGGGAAGACGAGGAAGGACGCCTACCATTGTTTTCGTGTGGTCGGGACTTCTTGCCATCACCATATCTCTTCTATGGGTGGCCATTAATCCCCCAAGTGGTGCAAATGAAATTGGAGGTTCATTCTCTTTCCCTTGA 2550 44.0 MVILGLFLAWRIRHPNTDAYWLWAMSVVCEVWFAFSWLLDQLPKLCPVNRATDLNVLKDKFETPSPSNPSGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANTWVPFCRKHNIEPRNPESYFNLKRDPFKNKVRSDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYHAREEIKAMKYQRQHVAIDEPMESVKIPRATWMADGTHWPGTWMQPSAEHSKGDHAGIIQVMLKPPSDEPLHGAADETRLIDLSEVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPHRSKERHLGCCSCCFGKQRKHTSIANSPEEHRGLRMGDSDDEEMDLSLFPKRFGNSSILVDSIPVAEFQGRPLADHPAVKYGRPPGALTIPRELLDASTVAEAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRMKILQRIAYLNVGIYPFTSFFLIVYCFLPALSLFSGQFIVQTLNVTFLTYLLVITITLCLLAILEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSTIPQWSRLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSGANEIGGSFSFP 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45008180 45013305 - Sed0016735.2 Sed05g3697 716323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3697 849 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 821 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)
Sed05g3697 849 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 280 423 IPR029044 -
Sed05g3697 849 SUPERFAMILY Nucleotide-diphospho-sugar transferases 93 643 IPR029044 -
Sed05g3697 849 FunFam cellulose synthase-like protein D3 284 421 - -
Sed05g3697 849 Pfam Cellulose synthase 78 839 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3697 Sed-Chr5:45008180 Sed12g0395 Sed-Chr12:2378613 0.00E+00 dispersed
Sed05g3696 Sed-Chr5:45008180 Sed05g3697 Sed-Chr5:45008180 0.00E+00 tandem
Sed05g3697 Sed-Chr5:45008180 Sed05g3698 Sed-Chr5:45019201 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3697 K20924 - csv:101221949 1687.16