Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3704 ATGATTTCCATTGCCCAACTTTCCGACGCCCAGCAACCAAGCGCCTCCTCCAAATTCTCACCCGCTCCGCCGCCCACGACGGCGCCGACCCACATTTTCCGATCCAAATTCCCCGACATTACAATCCCCGACCACCTCCCACTCCACAGCTACTGCTTCGAGAAACTCCCCGAATTTTCCGACAACCCCTGTTTGGTTGTCGCCTCCACCGGGAAATCCTATTCCTTCTCCCAAACGCACCTCCTCGCCCGGAAATCCGCCGCCGCTTTCTCCGAACTCGGAATCAGCAAAGGCGATGTGATTATGATTCTCCTCCAGAACTCCCCTGAATTCGTTTTCTCGTTTCTGGGTTCGTCGATGATCGGCGCCGTCGCCACCACCGGAAATCCGTACTACACGGCGGCGGAGATTGCGAAGCAAATGAAGGCTTCCGGCGCCAAATTGGTGGTTACGTACTCGCAATGCGTGGACAAGATCCGGGAATTTGCCGGCGAGGAGGTGACCGTCGTGACGGTGGATGAGCCGCCGGAAAATTGTGTGGGGTTCTCGTCGGTGGTGTATGAAAGGGATGAAAGTGATGACGTGGCGCCGGCAGAAATATTCTCTGATGACGCGGTTTCGCTGCCGTTTTCCTCCGGCACGACGGGGCTACCGAAGGGCGTGATTTTGACCCATAAGAGTATGATCTCCAGCGTGGCCCAACAGGTGGATGGAGAGAATCCAAATGTGCATTTGACACCAAAAGATGTAGTTTTATGTGTGCTTCCAATGTTCCACATATTTTCATTGAGCAGCATACTTCTGATTTCAATTAGATCAGGATCAACAATGTTGCTCATGGAGAAGTTTGATATTAACACATTCTTTCCCCTTATAGAGCGCTACCGTGTGACGGTGGCGACAGTCGTGCCACCGCTCGTGGTGGCAATGGTGAAGAATCCAAAGGTGACGAATTTTGACCTGAGCTCGATTAGAATGGTGCTTTCGGGGGCTGCACCCCTTCGAAAGGAGCTGGAGGAGGCCCTCATGCTGAGGATTCCTCAAGCAGTTTTTGGTCAGGGTTATGGGATGACAGAAGCAGGGCCGGTGGTAAGCATGTGCTCGGCCTTTGCTAAGGAGCCTTTGATGCCAACAAAATCAGGATCCTGTGGCAGAGTGGTGAGAAATGCTGAACTCAAAATCATTGACCCACAAACAGGAACCTCTCTTGGCTATAATCAAACTGGAGAGATTTGTGTCCGTGGTCCTCAAATTATGAAAGGATATTTGAACGACCCAGTGGCCACGTCATTAACTATCGACGTGGAGGGTTGGCTTCACACAGGTGACATTGGTTACATTGACGATGAAGAAGAAATTTTCATAGTTGACCGAGTCAAAGAGATTATTAAATTTAAAGGTTTCCAGGTGGCACCAGCAGAGTTGGAGGCCCTTCTTCTAACCCACTCATCTATTGCTGATGTGGCTGTTGTCCCGCAAAATGATGATGCTGCTGGTGAAGTTCCAGTGGCTTTCGTAGTTCGATCGGAGAATGAACTTACCGAGGAAGCAGTGAAAGAATTCATAGCTAAGCAGGTTGTGTTCTACAAGAGATTGCATAAAGTTTATTTTGTGCAAACAATTCCTAAATCTCCCTCTGGAAAGATCTTGAGAAAGGATCTCAAAGCCAAGCTCTCAGGCTCACCTGCCTTTTAA 1695 49.91 MISIAQLSDAQQPSASSKFSPAPPPTTAPTHIFRSKFPDITIPDHLPLHSYCFEKLPEFSDNPCLVVASTGKSYSFSQTHLLARKSAAAFSELGISKGDVIMILLQNSPEFVFSFLGSSMIGAVATTGNPYYTAAEIAKQMKASGAKLVVTYSQCVDKIREFAGEEVTVVTVDEPPENCVGFSSVVYERDESDDVAPAEIFSDDAVSLPFSSGTTGLPKGVILTHKSMISSVAQQVDGENPNVHLTPKDVVLCVLPMFHIFSLSSILLISIRSGSTMLLMEKFDINTFFPLIERYRVTVATVVPPLVVAMVKNPKVTNFDLSSIRMVLSGAAPLRKELEEALMLRIPQAVFGQGYGMTEAGPVVSMCSAFAKEPLMPTKSGSCGRVVRNAELKIIDPQTGTSLGYNQTGEICVRGPQIMKGYLNDPVATSLTIDVEGWLHTGDIGYIDDEEEIFIVDRVKEIIKFKGFQVAPAELEALLLTHSSIADVAVVPQNDDAAGEVPVAFVVRSENELTEEAVKEFIAKQVVFYKRLHKVYFVQTIPKSPSGKILRKDLKAKLSGSPAF 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45056475 45061987 + Sed0019815.1 Sed05g3704 716330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3704 564 MobiDBLite consensus disorder prediction 1 26 - -
Sed05g3704 564 MobiDBLite consensus disorder prediction 1 17 - -
Sed05g3704 564 FunFam Long-chain-fatty-acid--CoA ligase FadD 34 460 - -
Sed05g3704 564 ProSitePatterns Putative AMP-binding domain signature. 208 219 IPR020845 -
Sed05g3704 564 Gene3D - 460 560 IPR045851 -
Sed05g3704 564 FunFam 4-coumarate--CoA ligase 2 461 561 - -
Sed05g3704 564 Pfam AMP-binding enzyme 58 423 IPR000873 -
Sed05g3704 564 CDD 4CL 42 554 - -
Sed05g3704 564 Pfam AMP-binding enzyme C-terminal domain 474 548 IPR025110 -
Sed05g3704 564 Gene3D - 26 459 IPR042099 -
Sed05g3704 564 SUPERFAMILY Acetyl-CoA synthetase-like 10 559 - -
Sed05g3704 564 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 555 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3704 Sed-Chr5:45056475 Sed09g1419 Sed-Chr9:38064399 8.90E-175 dispersed
Sed05g0503 Sed-Chr5:3466717 Sed05g3704 Sed-Chr5:45056475 9.30E-46 transposed
Sed01g0377 Sed-Chr1:2882160 Sed05g3704 Sed-Chr5:45056475 3.30E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3704 K01904 - csv:101221344 846.269