Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3729 ATGAGCTTTCATTGGAACTCAACAATTTTTGTTTTTCTTCTTCTTCTTCAATCTTGTTGTAATGGGTTGAATTTTGATGGGGTTCTCTTGCTTTCGTTCAAGTATGGAGTTTTGAATGATCCTCTTTTTGTTCTTCAAAACTGGAATTACTCCGATCAGACGCCCTGTTCATGGCGTGGAGTCACCTGCTCCGGCGGCGGCGGCGGCGACGGCGCTAGAGTTACGGCTTTATCTCTGCCAAATTCGAAGCTTATGGGCTCTGTTTCTTCTGATTTGGGTTTGATTGAAAACCTTCAATCGGTTGATCTTTCGAATAATTCCTTTAATGGGTCTCTCCCCTTGTCTCTGTTCAACAGTACCATGCTTCGATTTCTTGATTTGTCGCAGAATTTGATCTCCGGCGAGGTTCCGACGGCGGTGGGTCGACTTGAGAATCTGCAAGTTCTTAACCTTTCCGGCAATGCACTGTTCGGGAAGTTTCCGAGTAGTTTAGCGAATTTGGGTAATCTCACGGTTGTGTCAATGAAGCACAATTACATTTCCGGTGAGATTCCCGGTGGGTTTAGGACGGTGGAGGTTTTGGATCTGTCTTCCAATTTGATAAATGGGTCTTTGCCGTCTGATTTCGCCGGCGAAAGTTTACGTTACTTCAACATCTCGAACAACAGAGTTTCCGGCGAAATCCCTCCGGATTTCGCCCACAAAATCCCGGCCAACGCTACAATCGATCTCTCCTTCAACAACCTCACCGGCGAAATCCCAGTTTCCGACGTGTTCATGAACCAAGAATCTATCTCCTTCACCGGAAACCGGGAACTCTGCGGCGAGTTAACGAAAACCCCATGCCCCATCCCATCGTCGCCGGCGTCTCTCCCGCCGGCGATCGCGGCCATTCCAATAGACCCAAGTACCGGAGAAACAACCTCGCCGGAAAAACAGAGCAAAACAGAGTTCAAGTCGTCAACAATCGTGGCCATAGTACTCGGCGACGCGGCCGGCTTAGCAATACTGAGCCTCCTATTCATCTACGTCCAGCATTTGAAAAGGAAAAACAAAACCCATTTGAAAAACGAAACAGAGAAAGAGAACGGGTCGGAATCCTCATCGGAATCCAGAGGATTTTCGCGATGGTCGTGCCTGAGGAAAACAGAGGACCCGGAAATGGGGAATTCGGGAGGGGGGAATGTGGGGTCGGAGTCGGGGCACCGGGAGAGGGCGGCGGAGATGGGGAATTTGGTGGCGGTGGACGGCGGAGAGAAGGAGCTGGAACTGGAGACGCTGTTGAAGGCGTCGGCGTACATTCTGGGGGCGACCGGAACGAGCATAACGTACAAGGCGGTGGTGGAGGACGGCACGGCGTTTGCGGTGAGGCGAATCGGAGAAGGGGGAGTTGAGAAATATAAAGATTTTGAGAATCAGATTCGAAGTGTCGCCAAATTGGTTCATCCCAATTTGGTTCGTGTTCGTGGCTTTTATTGGGGCCTTGATGAAAAGCTTATCATTTATGATTTTGTTCCTAACGGTAGCCTCGCCAATGCTCGTTACAGGAAAGTGGGCTCTTCGCCTTGTCATCTTCCATGGGAGGCCCGATTGAGAATTGCAAAAGGAGTGGCCCGAGGCCTTTCTTATCTCCACGACAAGAAGCACGTCCACACCAACTTGAAGCCCACCAACATTCTCTTAGACTACAACATGGAGCCCAAGATCGGCGATTTCGGCCTCGATAAGCTCTTCTTCGGCGACTCCAGCTACAAACCGGGCGGTTCCACTCGAAATTTCGGTAGCAAGAGATCCACCGCGTCCAAGGATAGTTTCCAAGACTATGCTGTTGGACCGAGCCCTGGACCGAGTCCGAGTCCAAGCTCGATCAGTGGGGTGTCTCCCTACCTTGCACCGGAATCGTTTCGGAGCCTGAAGCCCAACCCGAAATGGGATGTGTACTCCTTTGGGGTGATATTGCTTGAGCTACTAACGGGGAAGATCGTTGTGTTGGATGAGTTGGGTCAAGGGCTTGAGCTTGCGGTCGAAGATAAGAGTCGAGCCCTAAAGATGGCTGACATGGCGATTCGGGCGGACGTGGAGGGGAGAGAAGAAGAATTGTTGTCTTTCTTTAAATTAGGATATAGTTGTGCCTCTTCTACCCCACAAAAGAGACCATGCATGAAAGAAGCCTTGCAAGTTTTGGAGAAATTTCCAACCATTTCCATGTCATCACACTATTTTGATATCTAG 2232 50.0 MSFHWNSTIFVFLLLLQSCCNGLNFDGVLLLSFKYGVLNDPLFVLQNWNYSDQTPCSWRGVTCSGGGGGDGARVTALSLPNSKLMGSVSSDLGLIENLQSVDLSNNSFNGSLPLSLFNSTMLRFLDLSQNLISGEVPTAVGRLENLQVLNLSGNALFGKFPSSLANLGNLTVVSMKHNYISGEIPGGFRTVEVLDLSSNLINGSLPSDFAGESLRYFNISNNRVSGEIPPDFAHKIPANATIDLSFNNLTGEIPVSDVFMNQESISFTGNRELCGELTKTPCPIPSSPASLPPAIAAIPIDPSTGETTSPEKQSKTEFKSSTIVAIVLGDAAGLAILSLLFIYVQHLKRKNKTHLKNETEKENGSESSSESRGFSRWSCLRKTEDPEMGNSGGGNVGSESGHRERAAEMGNLVAVDGGEKELELETLLKASAYILGATGTSITYKAVVEDGTAFAVRRIGEGGVEKYKDFENQIRSVAKLVHPNLVRVRGFYWGLDEKLIIYDFVPNGSLANARYRKVGSSPCHLPWEARLRIAKGVARGLSYLHDKKHVHTNLKPTNILLDYNMEPKIGDFGLDKLFFGDSSYKPGGSTRNFGSKRSTASKDSFQDYAVGPSPGPSPSPSSISGVSPYLAPESFRSLKPNPKWDVYSFGVILLELLTGKIVVLDELGQGLELAVEDKSRALKMADMAIRADVEGREEELLSFFKLGYSCASSTPQKRPCMKEALQVLEKFPTISMSSHYFDI 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45202680 45206184 - Sed0027521.1 Sed05g3729 716355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3729 743 FunFam Leucine-rich repeat receptor-like protein kinase 190 284 - -
Sed05g3729 743 SUPERFAMILY Protein kinase-like (PK-like) 434 729 IPR011009 -
Sed05g3729 743 Gene3D Phosphorylase Kinase; domain 1 395 504 - -
Sed05g3729 743 SUPERFAMILY L domain-like 28 275 - -
Sed05g3729 743 CDD STKc_IRAK 435 731 - -
Sed05g3729 743 Gene3D Transferase(Phosphotransferase) domain 1 505 739 - -
Sed05g3729 743 MobiDBLite consensus disorder prediction 605 625 - -
Sed05g3729 743 ProSiteProfiles Protein kinase domain profile. 429 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3729 743 PANTHER OS05G0588300 PROTEIN 193 731 IPR050994 -
Sed05g3729 743 Pfam Protein kinase domain 435 726 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3729 743 MobiDBLite consensus disorder prediction 355 403 - -
Sed05g3729 743 FunFam Leucine-rich repeat receptor-like protein kinase 23 186 - -
Sed05g3729 743 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Sed05g3729 743 Gene3D Ribonuclease Inhibitor 24 189 IPR032675 -
Sed05g3729 743 Gene3D Ribonuclease Inhibitor 190 284 IPR032675 -
Sed05g3729 743 Pfam Leucine Rich Repeat 213 233 IPR001611 GO:0005515(InterPro)
Sed05g3729 743 Pfam Leucine Rich Repeat 97 118 IPR001611 GO:0005515(InterPro)
Sed05g3729 743 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515(InterPro)
Sed05g3729 743 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515(InterPro)
Sed05g3729 743 Pfam Leucine Rich Repeat 145 167 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3729 Sed-Chr5:45202680 Sed11g1647 Sed-Chr11:31758718 3.40E-89 dispersed
Sed13g0474 Sed-Chr13:3219977 Sed05g3729 Sed-Chr5:45202680 2.10E-134 transposed
Sed01g0408 Sed-Chr1:3091372 Sed05g3729 Sed-Chr5:45202680 1.60E-288 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79298 PF00069 Pkinase 6.90E-30 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3729 - - - 0.0