Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3731 ATGAACGCAACATTTCTCCTCTCTTCACCATACATGGGAAGCCTCCCCTTGCCAATCACACCCTCTAAGCCCCGCCTATTCCCCTCTCCAAACAGAACCACATTCCCAAACCCTTTTCTCCCACCATCTTTCCCCTCTTCTCCATTTCCCGATCGCAAGTTTCTCAATCTTCGCCCACGGCGGCTCCGTCTCTGCCCGGCCGCCGCTGTAACTCATCATTCCGATCATAACCACCACCACCACCACCATCATCATCATTGCCATTGCAATCACGATGTGGAGCTGAGTAGGGCTCAGAGATGGGTGATTGGATTCGCTAAAGCCATCAAGTGGACGGACTTGGCTGGTTATCTGAGGGAACATCTGGGGTTATGTCGCTGCTCTTTGGCTTTGTTTGTTGCTTCTTCTGTTTACCCTTATTTGCTGCCCAAGCTTATTGTGAGGCCTTTGCAGAATGCTTTCTTTCTCCTTGCTTTTCCTTTAGTTGGGGTCTCCTCATCCCTTGATGCTTTAACTGATATTAGTGGTGGAAAAGTAAACATTCATGTACTTATGGCTCTTGCAGCCTTTGCATCCATCTTTATGGGGAACGCCTTGGAAGGAGGACTCCTGCTTGCCATGTTTAATCTGTCTCACATAGCGGAAGAGTATTTTACAAGTCGTGCAATGATTGATGTCAAAGATGGTGAACTTCCAAATATTTCAGATTTGTCCTACCAGAAGGTGCCTGTCCATGATGTACAAGTGGATTCCTATATATTGATTGTGAAATTTTCCAAGGTAGCGGTCACCATTGAGCACCTAACAGGTGAAATCAAACCTTTAGAGATTACGGTTGGAGATAGAGTTCCTGGTGGTGCAAGGAACTTGGATGGTAGGATAATTGTCAAGGCCTCAAAGACCTGGAAAGAGTCAACTCTGAGTCGGATAGTGAACTTGACTGAAGAGGCACAACTAAATAAACCAAGACTTCAAAGGTGGCTGGATGAATTTGGCGAGCATTATAGCAAAGCAGTTGTAGTTTTGTCCATTGCTATTGCCCTTGTTGGCCCAATATTATTCAAGTGGCCATTTATTGGTACATCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCCGTTGCACCTTTGGCTTATGCTATTGCAATTAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGGCGTGTATTAGATGCTTTAGCTTCTTGCCGCACTATAGCATTTGATAAAACTGGGACGTTGACTACTGGGTGCCTTATTTTCAAAGCAATCGAACCAATTTACGGACATAAGATCAGAGAAAACAAATCAGACTTTGGTTCATGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACTCACCCCATCGGAAGAGCTGTGGTTGACAATAGTATGGGAATAAACCTCCCTTCATTCTCTGTCCAAAATTTGGAATATTTTCCGGGCAGAGGACTCGTTGCAACTCTGCATGGTGTTGAGTCAGATGCTCAAGGTGGTAAACTATTGAGAGCATCCCTTGTTTCGTTAGATTTCATCACTTCACTCTACAAATCAGAAACCAAATCAAAAGAGATCAAAGAAGCTGCAAGCACATCTTCGTATGGAAGTGAATTTGTTCATGCTGCTCTTGCAGTTGACGAGAAGGTAACACTTATTCATCTCGAAGATCGACCTCATCCTGGAGTTTCAAGCATAATTGCAGAATTAACAGATATAGCAAAACTCCATGTTATGATGTTGACTGGAGATCATGAGTCAAGTGCAAGGAGAGTGGTGAAAGCAGTGGGCAAGGAACTTAGTCACGTGAAAAGTATCTCTAGGGAGAATGGAGGAGGGCTAATCATGGTTGGTGAAGGCATCAATGATGCACCAGCTCTAGCCGCTGCTACCGTTGGAATAGTACTCACTCAATGTGCTAGTGCGACTGGTGTAGCCATGGCAGATGTTCTGTTGCTTCAGGATAACGTTTCTGGTGTACCATTCTGTATCGCCAAGTCTTGCCAGACGACTGCCTTGGTAATTACAAGACAACCATTGTTAAACAGAATGCTAGTCTTGCCTTATTTTGCAATATTTATGGCTTCCCTTCCCACTGTTTTAGGGATTCTTCCCTTGTGGTTAACGCCTAACGGTACTTCTGATGAAGGGGGTACTCTTCTTGTTTGCCTCAATTCCATACGCGCGCTGAATAATCCGAGTTGGTCCTGGAGGCAGGACTTGAGTCAATTGCTAATGGACAAGCCTTAA 2316 45.03 MNATFLLSSPYMGSLPLPITPSKPRLFPSPNRTTFPNPFLPPSFPSSPFPDRKFLNLRPRRLRLCPAAAVTHHSDHNHHHHHHHHHCHCNHDVELSRAQRWVIGFAKAIKWTDLAGYLREHLGLCRCSLALFVASSVYPYLLPKLIVRPLQNAFFLLAFPLVGVSSSLDALTDISGGKVNIHVLMALAAFASIFMGNALEGGLLLAMFNLSHIAEEYFTSRAMIDVKDGELPNISDLSYQKVPVHDVQVDSYILIVKFSKVAVTIEHLTGEIKPLEITVGDRVPGGARNLDGRIIVKASKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLSIAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALASCRTIAFDKTGTLTTGCLIFKAIEPIYGHKIRENKSDFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDNSMGINLPSFSVQNLEYFPGRGLVATLHGVESDAQGGKLLRASLVSLDFITSLYKSETKSKEIKEAASTSSYGSEFVHAALAVDEKVTLIHLEDRPHPGVSSIIAELTDIAKLHVMMLTGDHESSARRVVKAVGKELSHVKSISRENGGGLIMVGEGINDAPALAAATVGIVLTQCASATGVAMADVLLLQDNVSGVPFCIAKSCQTTALVITRQPLLNRMLVLPYFAIFMASLPTVLGILPLWLTPNGTSDEGGTLLVCLNSIRALNNPSWSWRQDLSQLLMDKP 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45229701 45243929 - Sed0000005.1 Sed05g3731 716357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3731 771 PRINTS P-type cation-transporting ATPase superfamily signature 420 434 - -
Sed05g3731 771 PRINTS P-type cation-transporting ATPase superfamily signature 639 658 - -
Sed05g3731 771 PRINTS P-type cation-transporting ATPase superfamily signature 663 675 - -
Sed05g3731 771 NCBIfam heavy metal translocating P-type ATPase 181 750 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed05g3731 771 SUPERFAMILY Calcium ATPase, transduction domain A 238 313 IPR008250 -
Sed05g3731 771 Gene3D - 431 581 IPR023299 GO:0000166(InterPro)
Sed05g3731 771 Gene3D - 413 687 IPR023214 -
Sed05g3731 771 SUPERFAMILY Calcium ATPase, transmembrane domain M 183 488 IPR023298 -
Sed05g3731 771 Gene3D - 223 318 - -
Sed05g3731 771 ProSitePatterns E1-E2 ATPases phosphorylation site. 422 428 IPR018303 -
Sed05g3731 771 Pfam haloacid dehalogenase-like hydrolase 417 652 - -
Sed05g3731 771 NCBIfam HAD-IC family P-type ATPase 259 441 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g3731 771 NCBIfam HAD-IC family P-type ATPase 554 695 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed05g3731 771 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 72 767 IPR051949 -
Sed05g3731 771 SUPERFAMILY HAD-like 418 712 IPR036412 -
Sed05g3731 771 Pfam E1-E2 ATPase 255 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0376 Sed-Chr1:2868939 Sed05g3731 Sed-Chr5:45229701 1.00E-267 dispersed
Sed05g3731 Sed-Chr5:45229701 Sed11g0565 Sed-Chr11:6066640 1.60E-33 dispersed
Sed05g3731 Sed-Chr5:45229701 Sed12g2195 Sed-Chr12:32410702 1.90E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3731 K01534 - mdm:103453726 953.355